1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tccatctgttcttaattcatttattcatgtgaaacgcttgcatctctgtggttggtcctgtaaaatttgcacttaacatatagccttatttcatcaccagAGTGATGTTGCGACTGAAGGTGAAACTGGAAAAGTATTCAGAGCAAATTTTCATGACCGGCATGGGAGAACTGTTCTCATACTGAGACCAGGAAAGCAG
species | Vitis vinifera |
transcript | Vv18s0001g12420.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGAAACACTGACGTGGAGGTCAACCTATAAGCCTGAGGAAATCCGCTGG AGTGATGTTGCGACTGAAGGTGAAACTGGAAAAGTATTCAGAGCAAATTTTEST: gi|110417506|gb|EC983568.1|EC983568
genomic: AAGAAACACTGACATGGAGGTCAACCTATAAGCCTGAGGAAATCCGCTGGgtaagttgat ... tcatcaccagAGTGATGTTGCGACTGAAGGTGAAACTGGAAAAGTATTCAGAGCAAATTTT
EST: AAGAAACACTGACGTGGAGATCAACCTATAAGCCTGAGGAAATCCGCTGG AGTGATGTTGCAACTGAAGGTGAAACTGGAAAAGTATTCAGAGCAAATTTTEST: gi|110422282|gb|EC988600.1|EC988600
genomic: AAGAAACACTGACATGGAGGTCAACCTATAAGCCTGAGGAAATCCGCTGGgtaagttgat ... tcatcaccagAGTGATGTTGCGACTGAAGGTGAAACTGGAAAAGTATTCAGAGCAAATTTT
EST: AAGAAACACTGACGTGGAGATCAACCTATAAGCCTGAGGAAATCCGCTGG AGTGATGTTGCAACTGAAGGTGAAACTGGAAAAGTATTCAGAGCAAATTTTEST: gi|71866383|gb|DT015438.1|DT015438
genomic: AAGAAACACTGACATGGAGGTCAACCTATAAGCCTGAGGAAATCCGCTGGgtaagttgat ... tcatcaccagAGTGATGTTGCGACTGAAGGTGAAACTGGAAAAGTATTCAGAGCAAATTTT
EST: AAGAAACACTGACGTGGAGGTCAACCTATAAGCCTGAGGAAATCCGCTGG AGTGATGTTGCGACTGAAGGTGAAACTGGAAAAGTATTCAGAGCAAATTTTEST: gi|110428482|gb|EC994956.1|EC994956
genomic: AAGAAACACTGACATGGAGGTCAACCTATAAGCCTGAGGAAATCCGCTGGgtaagttgat ... tcatcaccagAGTGATGTTGCGACTGAAGGTGAAACTGGAAAAGTATTCAGAGCAAATTTT
EST: GAAACACTGACGTGGAGGTCAACCTATAAGCCTGAGGAAATCCGCTGG AGTGATGTTGCGACTGAAGGTGAAACTGGAAAAGTATTCAGAGCAAATTTT
genomic: GAAACACTGACATGGAGGTCAACCTATAAGCCTGAGGAAATCCGCTGGgtaagttgat ... tcatcaccagAGTGATGTTGCGACTGAAGGTGAAACTGGAAAAGTATTCAGAGCAAATTTT
ctgtggttggtcctgtaaaatttgcacttaacatatagccttatttcatcaccagAGTGATGTTGCGACTGAAGGTGAAACTGGAAAAGTATTCAGAGCAAATTTTCATGACCGGCATGGGAGAACTGTTCTCATACTGAGACCAGGAAAGCAG
acttaac putative branch site (score: 3)
ccttatttc putative PPT
tgtaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccatctgttcttaattcatttattcatgtgaaacgcttgcatctctgtggttggtcctgtaaaatttgcacttaacatatagccttatttcatcaccagAGTGATGTTGCGACTGAAGGTGAAACTGGAAAAGTATTCAGAGCAAATTTTCATGACCGGCATGGGAGAACTGTTCTCATACTGAGACCAGGAAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
-ccatctg
- - - - - - - - - - - - -catgtga
- - - - - - - - - - - - - - - - - - - - - - - - tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctgta