1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctctttctctctccatgggttggattttgtccttttctatcggtcactcttatgttttgtgggcaagggattataactaataattaaattcattttctagGTGCAGATATGACGGAAAATCCGGTGGGAGTGTTGCAGCAAGCACCAGCGACTATATCGTTAACCACAGGCACAGTGACCAGCTCCAGCAGCAGCAGTAC
species | Vitis vinifera |
transcript | Vv18s0001g12220.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
actcttatgttttgtgggcaagggattataactaataattaaattcattttctagGTGCAGATATGACGGAAAATCCGGTGGGAGTGTTGCAGCAAGCACCAGCGACTATATCGTTAACCACAGGCACAGTGACCAGCTCCAGCAGCAGCAGTAC
aactaat putative branch site (score: 2)
ttcattttct putative PPT
attataactaataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctttctctctccatgggttggattttgtccttttctatcggtcactcttatgttttgtgggcaagggattataactaataattaaattcattttctagGTGCAGATATGACGGAAAATCCGGTGGGAGTGTTGCAGCAAGCACCAGCGACTATATCGTTAACCACAGGCACAGTGACCAGCTCCAGCAGCAGCAGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - ctctctc
- - - - - - - - gggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattaaa