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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttctgtttgagttctaaattgttagattctctcttcctctctcttaagaaacctccaaagtatttattattgaaggtgtccggttagtcactaaaggggatttcatttgatttctttcagGCAACAATGCCGTCAACCTTTAAGCACCCTGCTCATGTTCCTATGTGGAGGGGGGCTAAAGTTGCCTATGTGTTGATTGCCATGTGCATATTTCCTGTCG

Basic information

species Vitis vinifera
transcript Vv18s0001g11300.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349826728|gb|FQ418819.1|FQ418819
EST:     GAATTGTGGCCTTTGCATTCAGAGGTCACAATTTAGCCATGGAGATCCAG                         GCAACAATGCCGTCAACCTTTAAGCACCCTGCTCATGTTCCTATGTGGAGG
genomic: GAATTGTGGCCTTTGCATTCAGAGGTCACAATTTAGCCATGGAGATCCAGgtacgttctg ... tttctttcagGCAACAATGCCGTCAACCTTTAAGCACCCTGCTCATGTTCCTATGTGGAGG
EST: gi|351028439|gb|FQ427335.1|FQ427335
EST:     GAATTGTGGCCTTTGCATTCAGAGGTCACAATTTAGCCATGGAGATCCAG                         GCAACAATGCCGTCAACCTTTAAGCACCCTGCTCATGTTCCTATGTGGAGG
genomic: GAATTGTGGCCTTTGCATTCAGAGGTCACAATTTAGCCATGGAGATCCAGgtacgttctg ... tttctttcagGCAACAATGCCGTCAACCTTTAAGCACCCTGCTCATGTTCCTATGTGGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attattgaaggtgtccggttagtcactaaaggggatttcatttgatttctttcagGCAACAATGCCGTCAACCTTTAAGCACCCTGCTCATGTTCCTATGTGGAGGGGGGCTAAAGTTGCCTATGTGTTGATTGCCATGTGCATATTTCCTGTCG
                                             tttctttc  CT-rich tract
                                  atttcatttgattt  TA-rich tract