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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggaaatataaggttttacatgataataacaaaatatggcctttccatttgccttttaaaattaatatatacctaatctcgaacttatatatcctatattcgatatattttataagtactaacactagattgtttggccatggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCAGGAACAAGCACCGGTGGCCTCGTGACTGCCATGCTAACCACTCCCAATG

Basic information

species Vitis vinifera
transcript Vv18s0001g10830.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351030287|gb|FQ432225.1|FQ432225
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|351027065|gb|FQ439926.1|FQ439926
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|351020359|gb|FQ445966.1|FQ445966
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|161707591|gb|FC055647.1|FC055647
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|161712383|gb|FC061688.1|FC061688
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|349824177|gb|FQ417564.1|FQ417564
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|351033038|gb|FQ446391.1|FQ446391
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|349823760|gb|FQ415171.1|FQ415171
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|351043945|gb|FQ431376.1|FQ431376
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|349824179|gb|FQ417566.1|FQ417566
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|161718144|gb|FC068893.1|FC068893
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatattcgatatattttataagtactaacactagattgtttggccatggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCAGGAACAAGCACCGGTGGCCTCGTGACTGCCATGCTAACCACTCCCAATG
                       tactaac  putative branch site (score: 0)
         atatattttataagta  TA-rich tract