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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtctttgattgtagtttacataactcaatgaatctcttgtagaagtgtggcaaatacaattgaactctgtggcatgcttacatctgctttattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATTCAGAGTGTTAAGGGGAAGGTTGTGATTGATGCTTTCCGTTTGATAAATC

Basic information

species Vitis vinifera
transcript Vv18s0001g10820.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G09410.1 (Glycine max), 3'ss of exon 3
---tgtctttgattgtagtttacataactcaatgaatctcttgtagaagtgtggcaaatacaattgaactctgtggcatgcttacatctgctttattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATTCAGAGTGTTAAGGGGAAGGTTGTGATTGATGCTTTCCGTTTGATAAATC
   |   |   ||  |||| |  |  | |   |   | || | |  |   || ||   |   |||    |  ||  | ||||    | || |  ||  ||||||||||||| ||| |||||||||| || ||||| || || || |||||||| || |||||||| || || || |||||||||||||| || ||||| ||||
aattaaatccaatattagtattaactattattttggt-tcatattaataagttgctgctg--attagtatgagtaacttgctcctctatgttacatcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATACAAAGTGTTAAAGGCAAAGTGGTGATTGATGCTTTTCGATTGATCAATC

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G29660.1 (Glycine max), 3'ss of exon 3
tgtctttgattgtagtttacataactcaatgaatct-cttgtagaagtgtggcaaatacaattgaactctgtggcatgcttacatctgctttattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATTCAGAGTGTTAAGGGGAAGGTTGTGATTGATGCTTTCCGTTTGATAAATC
    |       |  ||   || |   | |   |    |  ||  ||| ||         |||    |  ||  | ||||    | || |  ||  ||||||||||||| ||| |||||||||| || ||||| || || || |||||||| || |||||||| || || || |||||||||||||| || ||||| ||||
-aattaaatccattattagtattaactattactttggttcatattagtatgttgctgctgattagtatgagtaacttgctcttctatgttacatcatgcagAGTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATACAAAGTGTTAAAGGCAAAGTGGTGATTGATGCTTTTCGATTGATCAATC

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G29660.2 (Glycine max), 3'ss of exon 3
tgtctttgatt-gtagtttacataactcaatgaatct-cttgtagaagtgtggcaaatacaattgaactctgtggcatgcttacatctgctttattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATTCAGAGTGTTAAGGGGAAGGTTGTGATTGATGCTTTCCGTTTGATAAATC--
    ||  ||   |  ||   || |   | |   |    |  ||  ||| ||         |||    |  ||  | ||||    | || |  ||  ||||||||||||| ||| |||||||||| || ||||| || || || |||||||| || |||||||| || || || |||||||||||||| || ||||| ||||  
----ttaaatccattattagtattaactattactttggttcatattagtatgttgctgctgattagtatgagtaacttgctcttctatgttacatcatgcagagTTTTGAGGCTTTGAATCAGCGTGCAGTGGCTGTGGTTGTAGATCCAATACAAAGTGTTAAAGGCAAAGTGGTGATTGATGCTTTTCGATTGATCAATCCG

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G36230.1 (Glycine max), 3'ss of exon 3
-tgtctttgattgtagtttacataactcaatgaatctcttgtagaagtgtggcaaatacaattgaactctgtggcatgcttacat-ctgctttattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATTCAGAGTGTTAAGGGGAAGGTTGTGATTGATGCTTTCCGTTTGATAAATC
  |   | || | ||||| |   |   |||    |   |   | | |  ||     |       || | | |   ||  |||  | ||  | | |  ||||||||||||| ||| | ||||| || || ||||| || |||||||| || |||||||||||||| || || || || ||||||||||||||  |||| ||| 
tagatgtggaatttagttgagccatgacaaacccttattcccaaagggatgttggttttcga-aaattgtatataatatttatgtacttttatttgatgcaGAGTTTTGAGGCTTTAAATCAACGGGCAGTGGCTGTGGTGGTGGACCCTATTCAGAGTGTTAAAGGCAAAGTGGTAATTGATGCTTTCCGGCTGATTAAT-

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G08940.1 (Glycine max), 3'ss of exon 3
-tgtctttgattgtagtttac-ataactcaatgaatctcttgtagaagtgtggcaaatacaattgaactctgtggcatgcttacat-ctgctttattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATTCAGAGTGTTAAGGGGAAGGTTGTGATTGATGCTTTCCGTTTGATAAATC
 ||   || | || |||   | || ||  |       ||   |||  |||| |    || ||   || | | |   ||   ||  | ||  | | |  ||||||||||||| ||| | ||||| || || ||||| || |||||||| || ||||||||||| || || || || || ||||||||||||||  |||| ||||
gtggaatttagtgaagtgagctatgacaaacccttattccaataggggtgttggttttagaa---aattgtatataatatgtatgtacttttatctgatgcagAGTTTTGAGGCTTTAAATCAACGGGCAGTGGCTGTGGTGGTGGACCCCATTCAGAGTGTGAAAGGCAAAGTGGTAATTGATGCTTTCCGGCTGATTAATC

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EDP09161 (Chlamydomonas reinhardtii), 3'ss of exon 4
---tgtctttgattgtagtttacataactcaatgaatctcttgtagaagtgtggcaaatacaattgaactctgtggcatgcttacatctgctttattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATTCAGAGTGTTAAGGGGAAGGTTGTGATTGATGCTTTCCGTTTGATAAATC
     ||||    ||   |    |   | |  |    |  || ||      |  ||| | |  ||   |    | ||    |    ||  |      | ||||  ||| || || |||||  | || || |||||||| |||||||||||| | |||||||| ||||| ||||| ||||| || || |||||  |||| |  |
cgccctcttcccctgcgctgctgacctcactctcgcgcggttctaacctcctcccaactgctcttttccctcatcgcgcctt---gtcctcaaaccggcgcagTCTTTCGAGGCGCTGAACAACCGCGCGGTGGCAGTGGTGGTGGATCCAGTGCAGAGTGTGAAGGGCAAGGTGGTGATCGACGCCTTCCGCCTGATCAGCC

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S181_105V6.1 (Physcomitrella patens), 3'ss of exon 4
------------------------------------------------tgt-ctttgattgtagt--ttacataactcaatg-aatctcttgtagaagtgtggcaaata----caattgaactctgtggca-tgct-tacatctgctttattgtg------cagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATTCAGAGTGTTAAGGGGAAGGTTGTGATTGATGCTTTCCGTTTGATAAATC
                                                ||| |   | | | |    |  ||| |   || | | |||    |||  | | | |   ||    |      | ||  || || || | || | | |  |  |||||      ||||||||||||||| |||| ||  |||| || || |||||||||||||||||||| ||||| || || ||||||||||||||||||||||| ||||| ||||
gtaagttaggcttgcactaactttcgttcttgcgttttgggtcccgaatgtgcaacggtggaaacaataccatgatctaacgcagtcttccatagttgggagaccggtatccccctccagaatcactgccagtgttctaaagcagtatccttgtgtatttgcagAGTTTTGAAGCTTTGAACCAAAGAGCGGTTGCGGTAGTGGTGGATCCAATTCAAAGTGTGAAAGGAAAGGTTGTGATTGATGCTTTCCGATTGATCAATC

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S46_324V6.1 (Physcomitrella patens), 3'ss of exon 3
tgtctttgattgtagtttacataactcaatgaatctctt-gtagaagtg-tggcaaatacaattgaactctgtggcatgcttacatctgctttattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATTCAGAGTGTTAAGGGGAAGGTTGTGATTGATGCTTTCCGTTTGATAAATC
  ||||    | |  |||   |   |   |   ||||||  || || || |   |  ||   || | || | |    |      ||     |   | ||||||||||||||||| |||||||  | || || |||||||| ||||||||||| || ||||| || || ||||||||||| |||||||| || ||||| || |
--tcttaaggtttcttttcttttcttttctatttctctttataaaaatgcttttaggtatgttttaccttttttctgtaacataattcttgtggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCCAAAGTGTGAAAGGAAAGGTTGTGATCGATGCTTTTCGATTGATCAACC

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S146_35V6.1 (Physcomitrella patens), 3'ss of exon 3
tgtctttgattgtagtttacataactcaatgaatctcttgtagaagtgtggcaaatacaattgaactctgtggcatgcttacatctg-ctttattgtg----cagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATTCAGAGTGTTAAGGGGAAGGTTGTGATTGATGCTTTCCGTTTGATAAATC
    |    ||| |||| |  |    |  |   ||| ||       |     |  |    |       |||||  | || |  |    ||||  ||||    ||||||||||||||| |||||||  |||||||||||||||||||||||||||| || ||||| || || |||||||||||||||||||| || ||||| || |
---gtacagttg-agttcat-tggtcctttttgtcttttacttccctaaattattttttctctgttggtgtggttttctaatttaaaacttttgtgtgaacccagAGTTTTGAAGCTTTGAATCAAAGAGCTGTGGCAGTAGTGGTGGATCCAATCCAAAGTGTGAAAGGAAAGGTTGTGATTGATGCTTTTCGATTGATCAACC

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ16494 (Selaginella moellendorffii), 3'ss of exon 3
tgtctttgattgtagtttacataactcaatgaatctcttgtagaagtgtggcaaatacaattgaactctgtggcatgcttacatctgcttta-ttgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATTCAGAGTGTTAAGGGGAAGGTTGTGATTGATGCTTTCCGTTTGATAAATC
                      ||    |  ||  ||| ||     |||  ||  |   || ||  ||   |  ||| ||       ||| | |||||||||| ||||||||  |||||||  |||||||||| || || ||||||||||| |||||||| || ||||| |||||||||||||| ||| |  | || ||||
--------------------gcaaggagaaaaaagtctagtctt--tgtttcactttggatggagttcacagatatgttttgga--acttgacttgtgcagAGCTTTGAAGCATTGAATCAAAGAGCTGTGGCGGTTGTCGTGGATCCAATCCAGAGTGTGAAAGGGAAAGTTGTGATTGATGCCTTCAGGCTTATCAATC

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ33925 (Selaginella moellendorffii), 3'ss of exon 3
tgtctttgattgtagtttacataactcaatgaatctcttgtagaagtgtggcaaatacaattgaactctgtggcatgcttacatctgctttattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATTCAGAGTGTTAAGGGGAAGGTTGTGATTGATGCTTTCCGTTTGATAAATC
                                       |||  | | |    ||   || |      | |    || || | | | |||| |||| ||||| ||||||||| |||||||  |||||||||| || ||||||||||| || || ||||| || || || || ||||| || || ||  |  ||||||| |
---------------------------------------gtaagaatctatagaacttaagtttcacgttttctttgtttgctttttcttttttgt-cagAGCTTTGAAGCTTTGAATCAAAGAGCTGTGGCGGTGGTGGTGGATCCTATCCAAAGTGTGAAAGGCAAAGTCGTGATCGACGCGTTTAGGCTGATAAACC

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ37436 (Selaginella moellendorffii), 3'ss of exon 3
tgtctttgattgtagtttacataactcaatgaatctcttgtagaagtgtggcaaatacaattgaactctgtggcatgcttacatctgctttattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATTCAGAGTGTTAAGGGGAAGGTTGTGATTGATGCTTTCCGTTTGATAAATC
                                       |||  | | |    ||   || |      | |    || || | | | |||| |||| ||||| ||||||||| |||||||  ||||||||||||| ||||||||||| ||||| ||||| || || || || ||||| || || ||  |  ||||||| |
---------------------------------------gtaagaatctatagaacttaagtttcacgttttctttgtttgccttttcttt-ttgt-cagAGCTTTGAAGCTTTGAATCAAAGAGCTGTGGCAGTGGTGGTGGATCCGATTCAAAGTGTGAAAGGCAAAGTCGTGATCGACGCGTTTAGGCTGATAAACC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161715964|gb|FC067142.1|FC067142
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|349810686|gb|FQ402929.1|FQ402929
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|71875919|gb|DT024974.1|DT024974
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|349824530|gb|FQ413197.1|FQ413197
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|110426580|gb|EC992993.1|EC992993
EST:     GGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: GGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|351040437|gb|FQ434570.1|FQ434570
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|110700849|gb|EE077863.1|EE077863
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGGAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|110726389|gb|EE102130.1|EE102130
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|110731528|gb|EE106018.1|EE106018
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|26261606|gb|CA812669.1|CA812669
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|110717253|gb|EE092950.1|EE092950
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|351048672|gb|FQ448946.1|FQ448946
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|349823482|gb|FQ414892.1|FQ414892
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGGGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|110364691|gb|EC928133.1|EC928133
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCATCGAGCTGTGGCAGTAGTGGTAGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|161714686|gb|FC062666.1|FC062666
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         ATTTTTGAAACTCTGAATCAGCAAGCTGTGACAGTAGTGCTGGAT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGAT
EST: gi|349809860|gb|FQ398485.1|FQ398485
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|110397855|gb|EC963800.1|EC963800
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTAGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|351044771|gb|FQ449025.1|FQ449025
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|30302146|gb|CB978940.1|CB978940
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|349811487|gb|FQ409483.1|FQ409483
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATTCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|46917963|gb|CN547292.1|CN547292
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|351041787|gb|FQ455997.1|FQ455997
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|351052596|gb|FQ456444.1|FQ456444
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|351036623|gb|FQ457336.1|FQ457336
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|349830677|gb|FQ416975.1|FQ416975
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|294966821|gb|GW837840.1|GW837840
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|26262771|gb|CA813834.1|CA813834
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|22011939|gb|BQ796973.1|BQ796973
EST:     GACATTAACACACAACAG                         AG-TTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: GACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|37185413|gb|CF604766.1|CF604766
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTAGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
EST: gi|351041956|gb|FQ456166.1|FQ456166
EST:     ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAG                         AGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT
genomic: ATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGgttggtcctt ... tattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtggcaaatacaattgaactctgtggcatgcttacatctgctttattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATTCAGAGTGTTAAGGGGAAGGTTGTGATTGATGCTTTCCGTTTGATAAATC
                              tgcttac  putative branch site (score: 2)
                                      tctgcttt  CT-rich tract
       aaatacaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtctttgattgtagtttacataactcaatgaatctcttgtagaagtgtggcaaatacaattgaactctgtggcatgcttacatctgctttattgtgcagAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATTCAGAGTGTTAAGGGGAAGGTTGTGATTGATGCTTTCCGTTTGATAAATC

- - - - - - - - - - - - ctcaatg
- - - - - - - - - - - - - - - - - - - - - - - - - -caaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgct