Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagttatactgagaacagtttcttccatgtgatcctgttgtaccatgaaatagttgcctttctaacttggttctttttatttgtttcccaatctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCTGTTGGATATGGCACAGAAAATGGTGTGGATTACTGGATTGTAAAGAACT

Basic information

species Vitis vinifera
transcript Vv18s0001g09990.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g09990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G166281_T01 (Zea mays), 3'ss of exon 3
----aagttatactgagaacagtttcttccatgtgatcctgttg-taccatgaaatagttgcctttctaacttggttctttttatttgtttcccaatctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCTGTTGGATATGGCACAGAAAATGGTGTGGATTACTGGATTGTAAAGAACT
        |   ||     |   |  ||     | ||| | |     |||||||  |  ||||||| ||   ||||   |  |  | ||||||    |||   ||||||| || |||||||| ||||| ||||| |||||||||||||| || || || || || || ||||| || ||   ||| |||||||| || |||||||
tagcggcgtgagctatcctccactaattaataattatcatttcaactccatgaatcatctgcctttgta--ctggtgactaattatcgtttcctggcctc---agGGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCCGTCGGCTACGGGACAGAGAACGGCAAGGACTACTGGATCGTGAAGAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110719067|gb|EE096620.1|EE096620
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|30133494|gb|CB918833.1|CB918833
EST:     TGAGTGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110396416|gb|EC962101.1|EC962101
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110719790|gb|EE095236.1|EE095236
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|27585466|gb|CB008161.1|CB008161
EST:     GGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: GGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|30129584|gb|CB914923.1|CB914923
EST:     CATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: CATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110718246|gb|EE094863.1|EE094863
EST:     GAGCGTTGCCATTGAAGNCAG-TGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAAATGTGGGA-ACGCACTGGACCATATTGTTACTGC
genomic: GAGCGTTGCCATTGAAG-CAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACA-GCACTGGACCATGGTGTTACTGC
EST: gi|161715034|gb|FC063619.1|FC063619
EST:     TGAGTGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|156738259|gb|EV242380.1|EV242380
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|351045354|gb|FQ451802.1|FQ451802
EST:     CATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCCATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCACGGTGTTACTGCT
genomic: CATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|34548523|gb|CF516755.1|CF516755
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|37187054|gb|CF606407.1|CF606407
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|30301493|gb|CB978287.1|CB978287
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110383097|gb|EC947448.1|EC947448
EST:     TGAGTGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCCATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110711563|gb|EE088188.1|EE088188
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|30134571|gb|CB919909.1|CB919909
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|349828844|gb|FQ419177.1|FQ419177
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|351021525|gb|FQ446069.1|FQ446069
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110713526|gb|EE089522.1|EE089522
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAAGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGGTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110720873|gb|EE097186.1|EE097186
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|33403110|gb|CF208737.1|CF208737
EST:     AGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: AGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|352768064|gb|FQ467203.1|FQ467203
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|22007218|gb|BQ792252.1|BQ792252
EST:     TGAGTGTTGCCA-TGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATC-                         GGTATA-TTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|294965973|gb|GW839312.1|GW839312
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110699425|gb|EE076410.1|EE076410
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110698496|gb|EE076058.1|EE076058
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110685440|gb|EE062164.1|EE062164
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|30129643|gb|CB914982.1|CB914982
EST:     CATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: CATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|351012824|gb|FQ430387.1|FQ430387
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|352786557|gb|FQ479764.1|FQ479764
EST:     CCAACTCTACCAATCA                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: CCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110711579|gb|EE088220.1|EE088220
EST:     TGAGCGTTGCCATTGAAGCAAGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|351049520|gb|FQ429142.1|FQ429142
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110712348|gb|EE089869.1|EE089869
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|30131634|gb|CB916973.1|CB916973
EST:     CATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: CATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110702914|gb|EE079302.1|EE079302
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|30134106|gb|CB919444.1|CB919444
EST:     ATTGAAGCAGGTGGCAGGGAATTCCAACTCTACGGATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: ATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110699846|gb|EE077217.1|EE077217
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110368864|gb|EC932994.1|EC932994
EST:     TGAGTGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110706084|gb|EE083674.1|EE083674
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110710918|gb|EE087519.1|EE087519
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110720776|gb|EE096992.1|EE096992
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110368801|gb|EC932884.1|EC932884
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110711545|gb|EE088146.1|EE088146
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|33409759|gb|CF215386.1|CF215386
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCA-CTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|110706813|gb|EE082665.1|EE082665
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
EST: gi|26265596|gb|CA816659.1|CA816659
EST:     TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCG                         GGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT
genomic: TGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGgtaaagttct ... atctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaatagttgcctttctaacttggttctttttatttgtttcccaatctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCTGTTGGATATGGCACAGAAAATGGTGTGGATTACTGGATTGTAAAGAACT
              ttctaac  putative branch site (score: 1)
                         ttctttttatttgttt  putative PPT
                         ttctttttatttgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aagttatactgagaacagtttcttccatgtgatcctgttgtaccatgaaatagttgcctttctaacttggttctttttatttgtttcccaatctcttcagGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCTGTTGGATATGGCACAGAAAATGGTGTGGATTACTGGATTGTAAAGAACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - gagaaca
- - - - - - - - - - - - -catgtga
- - - - - - - - - - - - - - - - -cctgttg
- - - - - - - - - - - - - - - - - - - - - ccatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgccttt