1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtcaactgtactaattgcaggaagggatttactgtttagtattggcagtaacaaaaagaggaacaggcacatttacatctaacattggtcccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGTTACGTTGATGGCGAAACATTATTCGGAGCTCCATATGACTTTCGATAC
species | Vitis vinifera |
transcript | Vv18s0001g08800.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGEST: gi|352791336|gb|FQ475026.1|FQ475026
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGEST: gi|351016791|gb|FQ424218.1|FQ424218
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGEST: gi|351029064|gb|FQ435264.1|FQ435264
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGEST: gi|161712013|gb|FC060042.1|FC060042
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGEST: gi|351016835|gb|FQ424262.1|FQ424262
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTG
EST: CCTAGCTTTGGTTCTACTCGCTCCCTCCTTCATTTAGATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGEST: gi|351017596|gb|FQ435949.1|FQ435949
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGEST: gi|351040325|gb|FQ434457.1|FQ434457
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAAATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGEST: gi|352785773|gb|FQ475776.1|FQ475776
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGEST: gi|351029160|gb|FQ435360.1|FQ435360
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGEST: gi|351042715|gb|FQ431192.1|FQ431192
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: CCTAGCTTTGGTTCTACCCGCTCCCTTCTTCATTTAGATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGEST: gi|351030044|gb|FQ430786.1|FQ430786
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGEST: gi|351036933|gb|FQ459455.1|FQ459455
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGEST: gi|351020090|gb|FQ445697.1|FQ445697
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: CCTAGCTTTGGTTTTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGEST: gi|349829097|gb|FQ419629.1|FQ419629
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGEST: gi|161717630|gb|FC067892.1|FC067892
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGEST: gi|352789683|gb|FQ476281.1|FQ476281
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGEST: gi|351029180|gb|FQ435380.1|FQ435380
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
cagtaacaaaaagaggaacaggcacatttacatctaacattggtcccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGTTACGTTGATGGCGAAACATTATTCGGAGCTCCATATGACTTTCGATAC
atctaac putative branch site (score: 2)
tcccatt putative PPT
atttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaactgtactaattgcaggaagggatttactgtttagtattggcagtaacaaaaagaggaacaggcacatttacatctaacattggtcccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGGTTACGTTGATGGCGAAACATTATTCGGAGCTCCATATGACTTTCGATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - gcaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catttac