1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgcataaatggtgaatgtaatgttgctatgaaatatcatgccttgtgtttgccagttgtttaagactctattaatgcatttccaaccaatgaatgtacagATGAGAAGTGCGAGGGTGTTGGTTCCTCAGAAGAGGATCAAGACAACAGTGGTGGGGAAACTGAACTTCCTGAGATTGATCCACGGGCGGAAGATAGAGA
species | Vitis vinifera |
transcript | Vv18s0001g08380.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCACAGCTAAATATGCTTAGCAATGGTCCCGTGCGGATCTTCACCTCCG ATGAGAAGTGCGAGGGTGTTGGTTCCTCAGAAGAGGATCAAGACAACAGTGEST: gi|34546295|gb|CF514527.1|CF514527
genomic: ATCACAGCTAAATATGCTTAGCAATGGTCCCGTGCGGATCTTCACCTCCGgtactccctc ... gaatgtacagATGAGAAGTGCGAGGGTGTTGGTTCCTCAGAAGAGGATCAAGACAACAGTG
EST: ATCACAGCTAAATATGCTTAGCAATGGTCCCGTGCGGATCTTCACCTCCG ATGAGAAGTGCGAGGGTGTTGGTTCCTCAGAAGAGGATCAAGACAACAGTGEST: gi|294964509|gb|GW838312.1|GW838312
genomic: ATCACAGCTAAATATGCTTAGCAATGGTCCCGTGCGGATCTTCACCTCCGgtactccctc ... gaatgtacagATGAGAAGTGCGAGGGTGTTGGTTCCTCAGAAGAGGATCAAGACAACAGTG
EST: ATCACAGCTAAATATGCTTAGCAATGGTCCCGTGCGGATCTTCACCTCCG ATGAGAAGTGCGAGGGTGTTGGTTCCTCAGAAGAGGATCAAGACAACAGTGEST: gi|110381205|gb|EC946526.1|EC946526
genomic: ATCACAGCTAAATATGCTTAGCAATGGTCCCGTGCGGATCTTCACCTCCGgtactccctc ... gaatgtacagATGAGAAGTGCGAGGGTGTTGGTTCCTCAGAAGAGGATCAAGACAACAGTG
EST: ATCACAGCTAAATATGCTTAGCAATGGTCCCGTGCGGATCTTCACCTCCG ATGAGAAGTGCGAGGGTGTTGGTTCCTCAGAAGAGGATCAAGACAACAGTG
genomic: ATCACAGCTAAATATGCTTAGCAATGGTCCCGTGCGGATCTTCACCTCCGgtactccctc ... gaatgtacagATGAGAAGTGCGAGGGTGTTGGTTCCTCAGAAGAGGATCAAGACAACAGTG
tgtttgccagttgtttaagactctattaatgcatttccaaccaatgaatgtacagATGAGAAGTGCGAGGGTGTTGGTTCCTCAGAAGAGGATCAAGACAACAGTGGTGGGGAAACTGAACTTCCTGAGATTGATCCACGGGCGGAAGATAGAGA
tattaat putative branch site (score: 2)
tctattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcataaatggtgaatgtaatgttgctatgaaatatcatgccttgtgtttgccagttgtttaagactctattaatgcatttccaaccaatgaatgtacagATGAGAAGTGCGAGGGTGTTGGTTCCTCAGAAGAGGATCAAGACAACAGTGGTGGGGAAACTGAACTTCCTGAGATTGATCCACGGGCGGAAGATAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - gtgaatg
- - - - - - - - - - - - -ctatgaa
- - - - - - - - - - - - - - - - - -tcatgcc
- - - - - - - - - - - - - - - - - - - - - - - gtttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaacca