Sequence
atgc intronic sequence ATGC exonic sequence...ttttatttgatgatactctttttcaagctctatctttttccatgcttgttgcatttttaaggttttagaaggttacatatgctactatttctctttccagAGTGCTATTCCTCAAAAGGGTAGTGAGGTGAATTTGACCCTTGGTGGTATTGACCTCAACAATTCAGGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g07310.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G019153_T01 (Zea mays), 3'ss of exon 5
---ttttatttgatgatactctttttcaagctctatctttttccatgcttgttgcatttttaaggttttagaaggttacatatgctactatttctctttccagAGTGCTATTCCTCAAAAGGGTAGTGAGGTGAATTTGACCCTTGGTGGTATTGACCTCAACAATTCAGGCAG
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ccacattcccatgcactactcaatttctctctctctctcttgc--tgcattttgtatgtataaggttttagaagatta-atctacttttgttttacttctcagAATGCCGTTTCTCAGAAGGGGAATGAAGTGAACTTAACTCTTGGCGGTATTGATCTCAACAATTCAGGCAG
upper sequence: Vv18s0001g07310.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G09860.1 (Glycine max), 3'ss of exon 5
ttttatttgatgatactctttttcaagctctat-ctttttccatgcttgttgcatttttaaggttttagaaggttacatatgctactatttctctttccagAGTGCTATTCCTCAAAAGGGTAGTGAGGTGAATTTGACCCTTGGTGGTATTGACCTCAACAATTCAGGCAG
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caacacacacacacatgcaagtctaacatgtttacttggtttgtgtttggaaacttgttatcatattcatatctttatcattgtgtt-ttttgctttacagAATGCTGTCCCTCAGAAGGGAAATGAAGTGAATTTGACCCTTGGTGGCATTGACCTCAACAATTCAGGCAG
upper sequence: Vv18s0001g07310.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G09780.1 (Glycine max), 3'ss of exon 2
ttttatttgatgatactctttttcaagctctatctttttccatgcttgttgcatttttaaggttttagaaggttacatatgctactat----------ttctctttccagAGTGCTATTCCTCAAAAGGGTAGTGAGGTGAATTTGACCCTTGGTGGTATTGACCTCAACAATTCAGGCAG
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--------aaacacacacacatgcaagtctaacatgtttacttggtt--tgtgtttggaaacttgttatcatattcatatatctttatcattgtgttttttgctttacagAATGCTGTCTCTCAGAAGGGAAATGAAGTGAATTTGACCCTTGGTGGCATTGACCTCAACAATTCAGGCAG
upper sequence: Vv18s0001g07310.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G24580.1 (Arabidopsis thaliana), 3'ss of exon 4
ttttatttgatgatactctttttcaagctctatctttttccatgcttgt-tgcatttttaaggttttagaaggttacatatgctactatttctctttccagAGTGCTATTCCTCAAAAGGGTAGTGAGGTGAATTTGACCCTTGGTGGTATTGACCTCAACAATTCAGGCAG
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-agagattggtgaaaatcctatatcagaaatattttttataaggcatgaacctgttattacagagtatgagtatctcaaatttttctgttctattcttcagAGTGCAGTCCAACAGAAGGGCAGTGAGGTCAATCTGACCCTTGGGGGAATTGATCTCAACAATTCAGGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttgcatttttaaggttttagaaggttacatatgctactatttctctttccagAGTGCTATTCCTCAAAAGGGTAGTGAGGTGAATTTGACCCTTGGTGGTATTGACCTCAACAATTCAGGCAG
ctactatttctctttc CT-rich tract
atttttaaggtttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttatttgatgatactctttttcaagctctatctttttccatgcttgttgcatttttaaggttttagaaggttacatatgctactatttctctttccagAGTGCTATTCCTCAAAAGGGTAGTGAGGTGAATTTGACCCTTGGTGGTATTGACCTCAACAATTCAGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - tcaagct
- - - - - - - - - - - - - - - - - - - -ccatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatgc