1 5' 3' | 2 5' 3' | 3 5' 3' |
...tatatcattgaactaacgtattatctcaaattccatataatttctaatatatatatatatatattttttttttttttttctttttctttttttcttttagGAACTCATACCATAGGTAAAGCAAGATGCACAAGTTTTCGAAATCATATTTACAACGACACCGACATCGATCCAGCATTTGCAGCATCAAAACAGAAAAT
species | Vitis vinifera |
transcript | Vv18s0001g06840.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCCTTCTCCAAGAAGGGCTTGACTACTAAGGAAATGGTGGTTCTCTCAG GAACTCATACCATAGGTAAAGCAAGATGCACAAGTTTTCGAAATCATATTT
genomic: TGCCTTCTCCAAGAAGGGCTTGACTACTAAGGAAATGGTGGTTCTCTCAGgtataatatt ... tttcttttagGAACTCATACCATAGGTAAAGCAAGATGCACAAGTTTTCGAAATCATATTT
aatatatatatatatatattttttttttttttttctttttctttttttcttttagGAACTCATACCATAGGTAAAGCAAGATGCACAAGTTTTCGAAATCATATTTACAACGACACCGACATCGATCCAGCATTTGCAGCATCAAAACAGAAAAT
ttctaat putative branch site (score: 2)
tatatttttttttttt putative PPT
atatatatatatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatcattgaactaacgtattatctcaaattccatataatttctaatatatatatatatatattttttttttttttttctttttctttttttcttttagGAACTCATACCATAGGTAAAGCAAGATGCACAAGTTTTCGAAATCATATTTACAACGACACCGACATCGATCCAGCATTTGCAGCATCAAAACAGAAAAT
- - - - - aactaac
- - - - - - - - - - - - - - - - ccatata