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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatttaccattgttatgcaatgccaaaattctactatcagactagatttatataacatttatttttgtttgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC

Basic information

species Vitis vinifera
transcript Vv18s0001g06290.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 3
gtaagcatttaccattgttatgcaatgccaaaattct---actatcagactagatttatataacatttatttttgtttgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
    | | || |  | |  ||    | |||  |||||   ||| ||   |||  || ||        |   |  |||||| |||||||   ||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||| | ||| |||| |||||  | ||  | |
----gtaatttctttggcaatttgct-ccatgattcttcaactgtcttgctat-ttaatgagttggatgactaagtttgtctgtttgt---acagGAATTCAAGGGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 3
gtaagcatttaccattgttatgcaatgccaaaattctactatc-agactagatttatataacatttatttttgtttgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
||||     |        |      | || || | ||  || | || ||  |  | | |||||| | | | |  || ||           |||||||| || |||||||| ||||| |||||||| || ||||||||||| || ||||| ||||||||||||||| | ||| |||| |||||  | ||  | |
gtaatatcgtgaggcctctg-atgtttcctaattactgttacctagtcttaagatgt-taacatatctctctcctttttct---------cagGAATTCAAGGGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G040600_T01 (Zea mays), 3'ss of exon 5
-gtaagcatttacca---ttgttatg--caatgccaaaattctactatcagactagatttata-taacatttatttttgtt-tgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
     | |||||| |   |||  |||    ||  |   || |     ||   ||    | ||| | | || ||  | || | ||||  ||||| |  ||||| || || || ||||| ||||| |||||||| || ||||||||||||||||||||||||||||| ||||| || ||| ||||||||||| | ||  |||
gagttgaatttacaaactttgggatgacttatttcttgatccatgactcttgctgatgtcatacttaaatataggtgtgatatgttcctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGGTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGCCTTCTGC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G054136_T09 (Zea mays), 3'ss of exon 3
gtaagcatttaccattgttatgcaatgccaaaattctactatcagactagatttata-taacatttatttttgtt-tgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
|||| | |||   ||   |     ||  |   || |     ||   ||   || ||| | | || ||  | || | ||||| ||||| |  ||||| || || || ||||| ||||| |||||||| || |||||||||||||| |||||||||||||| ||||| || ||| ||||||||||| ||||  |||
gtaaac-tttgggatgactt----atttcttgatccatgactcttgctgatttcatacttaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
-----------------gtaagcatttaccattgttatg--caatgccaaaattctactatcagactagatttatat---aacatttatttttgtt-tgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
                 |   |   | | | |||   ||    ||  |   || |     ||   ||   || |||    || || ||  | || | ||||| ||||| |  ||||| || || || ||||| ||||| |||||||| || |||||||||||||| |||||||||||||| ||||| || ||| ||||||||||| ||||  |||
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G054136_T05 (Zea mays), 3'ss of exon 3
--gtaagcatttaccattgttatg--caatgccaaaattctactatcagactagatttatat---aacatttatttttgtt-tgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
  |   |   | | | |||   ||    ||  |   || |     ||   ||   || |||    || || ||  | || | ||||| ||||| |  ||||| || || || ||||| ||||| |||||||| || |||||||||||||| |||||||||||||| ||||| || ||| ||||||||||| ||||  |||
ctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G054136_T01 (Zea mays), 3'ss of exon 3
gtaagcatttaccattgttatgcaatgccaaaattctactatcagactagatttatataacatttatttttgtttgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
|||| | ||        ||||    ||    |   ||  |    || |  ||   || ||   |   | |  | ||||| ||||| |  ||||| || || || ||||| ||||| |||||||| || |||||||||||||| |||||||||||||| ||||| || ||| ||||||||||| ||||  |||
gtaaactttggggtgacttatttcttgatccatgactcttgct-gatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
gtaagcatttaccattgttatgcaatgccaaaattctactatcagactagatttatataacatttatttttgtt-tgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
||||   ||   | || ||||    ||    |   |  ||||    ||   || |||    | ||||   |||  ||| | | | | |  ||||| ||||| || ||||| ||||| |||||||| || |||||||| ||||| |||||||||||||| |||||  | ||| ||||||||||  | ||  |||
gtaaattttctgctttcttatttcttgatccatgccccctattg--ctgatttcatact-taattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 3
gtaagcattt--accattgttatgcaatgccaaaattctactatcagactagatttatat--aacatttatttttgtttgtttgtttgtg--tgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
||| ||  ||   |   |    |  |||| |     |||    |    ||  |||||||   |  || ||||    ||  |   | |||     |||||||||||| |||||||| |||||||| |  ||||| |||||||| ||||| || |||||||||||||||||| | ||||||||||||||||| || ||||
gtatgctctttagctgctaaccttaaatgtctc--ctctgaatttctgctgaatttataatgattatctattcaccttcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 3
--------gtaagcatttaccattgttatg-caatgccaa--aattctactatcagactagatttatataac-atttatttttgtttgtttgtttg-tgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
        || |||    |   || ||||  ||||| ||     | ||| | |  |   || ||||  |||  || ||||    | | |   |||| |     |||| ||||| || ||||| ||||||||||  || || |||||||| ||||| ||||||||||||||||||||||| || |||||||||||| | |||||||
gtatgtttgttagctggaaatcttattatatcaatgtcagttgttcctattttaggtggagctttaattaatgatctattaacctatataactttgctactgaagGAGTTTAAAGGATATGTTTTCAAAATCACTGGTGGGTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G26190.1 (Glycine max), 3'ss of exon 2
gtaagcattt--accattgttatgcaatgccaaaattctactatcagactagatttatataacatttatttttgtttgtttgtttgtgt-gacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
||| ||  ||   |   |    |  |||||      || | | |      |  ||||   |  || ||||    ||  |    || ||   |||||||||||| |||||||| |||||||| |  ||||| |||||||| ||||| ||||| ||||| ||||||||| | ||||||||||||||| | || ||||
gtatgctctttagctgctaaccttaaatgcatcctctcaatttttgctgaatttttaatgattatctattcaccttcatgctcttttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCGATGAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
------------gtaagcatttaccattgttatgcaatgccaaaattctactatcagac-tagatttatataacatttatttttgtttgtttgtttgtg----tgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
             |       | |||| ||   |   | ||  || |   ||   | || | |||  ||       ||||   |  ||  || | | ||    | ||||||||| || |||||||| |||||||| |  ||||| || ||||||||||| || ||||||||||| |||||||| || |||||||||||| | |||||||
gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacctgagaaacattgatcaatgattggcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 4
gtaagcatttacc----attgttatgcaatgccaaaattctactatcagactagatttatataacatttatttttgtttgtttgtttgtgtg---acagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
||| |  |||  |    ||  ||   || ||| |   ||     |  |   | |||  ||       ||||| |  |||  ||||||   |     |||||||| || || ||||| |||||||| |  ||||| || ||||||||||| || ||||||||||| |||||||| || |||||||||||| | |||||||
gtatggttttggctggaatccttccacagtgc-agtgtttcctgagaaacattgatcaatgattggcttattctccttttcttgttttgctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G09330.1 (Glycine max), 3'ss of exon 1
gtaagcatt---taccattgttatgcaatgccaaaattctactatcagactagatttat--ataacatttatttttgtttgttt---gtttgtg----tgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
||| ||  |    | ||      |  ||| |     ||  | ||||     ||    ||  ||||   ||  | ||||    ||     || ||    | | |||||||||| || ||||| ||||||||||  || || |||||||| ||||| || |||||||||||||||||| |||| |||||  |||||  ||| ||||
gtatgctctgtagatcaaaaccttcaaatacttg--tttcaatatcttttgaggagcattgataattattgatcttgtcaactttaaaattatgctactaatagGAATTTAAAGGATATGTCTTCAAAATCACTGGTGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTAACACCTGGCTGTGTTCATCTTTTGC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 2
--------gtaagcatttaccattgttatg-caatgccaaaattctactatcagactag-atttatataacatttatttttgtttgtttgtttgt-gtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
        || |||    |   || ||||  |  || |    | ||| | |  |   || ||| | | |  || ||||    | | |   ||||       |||| ||||| || ||||| ||||||||||  || || |||||||| ||||| ||||| ||||||||||||||| | || |||||||||||| | || ||||
gtatgctcgttagctggaaatcttattatatctgtgtctgt-tcctattttttgtggagcattaagaaatgatctattaacctctataactttgccactgaagGAGTTTAAAGGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagcatttaccattgttatgcaatgccaaaattctactatc----agactagatttatataacatttatttttgtttgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
|| |  ||||    |  |  | || ||      ||||  | ||        |   | ||  |||||    | | ||| | ||    | | || |||||||| || || || |||||||| ||||||||||| |||||||||||||| ||||||||||| || |||||  | ||||| || |||||  |||| ||||
gtgaa-attttttctcctggttcagtgttttt-ttctgatgtcttgtgagttcagtatacttaacagaattgtgtgtgttttgagctatttg-cagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G31700.2 (Arabidopsis thaliana), 3'ss of exon 1
--gtaagcattt-accattgttatgcaatgccaa--aattctactatcaga--ctagatttatataac-atttatttttgtttgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
  |||   |||  |   || |||       | ||  | |   |  || ||    | ||   | || |  || | || ||  |   |||||  | |  ||||| || || || || || ||||| |||| ||| || || || |||||||| |||||||||||||||||||| || ||||| || |||||| | || ||||
aggtacagattccatttttcttactttgatctaatgagtgtgaagattagcatttcgaagcagatgatgatgttttgtttatgaattgttgttattgcagGAGTTCAAAGGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 3
gta-agcatttaccattgttatgcaatgccaa--aattctactatcaga--ctagatttatataac-atttatttttgtttgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
||| ||  |  |   || |||       | ||  | |   |  || ||    | ||   | || |  || | || ||  |   |||||  | |  ||||| || || || || || ||||| |||| ||| || || || |||||||| |||||||||||||||||||| || ||||| || |||||| | || ||||
gtacagattccatttttcttactttgatctaatgagtgtgaagattagcatttcgaagcagatgatgatgttttgtttatgaattgttgttattgcagGAGTTCAAAGGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGC

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S311_33V6.2 (Physcomitrella patens), 3'ss of exon 3
gtaagcatttaccattgttatgcaatgccaaaattctactatcagactagatttatataacatttatttttgtttgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC---------
                                                                  |   || |     | ||| ||||   || || || || || || ||||| || |||||||| ||||||||||| || ||||| ||||||||||| || || || |  || |||||    ||  ||          
-----------------------------------------------------------------gtcagtggtgaccagcttg-gtgat--gagttcaagggatacgttttcaagattatgggaggatgtgacaagcagggtttccccatgaagCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
gtaagcatttaccattgttatgcaatgccaaaattctactatcagactagatttatataacatttatt-tttgtttgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
                                         | |          || | |  |||  | ||||||      ||||     |||||||| || |||||||| ||||| ||||||||||| ||||||||| | || ||||| ||||||||||| ||  | |   |    |||||  | ||| || 
----------------------------------------gtgaattcgtcggcatttgagctttgctgtttgttctaagatttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT

upper sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ26393 (Selaginella moellendorffii), 3'ss of exon 2
gtaagcatttaccattgttatgcaatgccaaaattctactatcagactagatttatataacatttatt-tttgtttgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
                                         | |          || | |  |||  | ||||||      ||||     |||||||| || |||||||| ||||| ||||||||||| ||||||||| | || ||||| ||||||||||| ||  | |   |    |||||  | ||| || 
----------------------------------------gtgaattcgtcggcatttgagctttgctgtttgttctaagatttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110710093|gb|EE086127.1|EE086127
EST:     TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAG                         GAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
genomic: TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAGgtaagcattt ... tgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
EST: gi|110731210|gb|EE109174.1|EE109174
EST:     TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAG                         GAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
genomic: TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAGgtaagcattt ... tgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
EST: gi|110369359|gb|EC933517.1|EC933517
EST:     TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAG                         GAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
genomic: TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAGgtaagcattt ... tgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
EST: gi|29782562|gb|CB347995.2|CB347995
EST:     TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAG                         GAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
genomic: TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAGgtaagcattt ... tgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
EST: gi|110724727|gb|EE100810.1|EE100810
EST:     TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAG                         GAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
genomic: TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAGgtaagcattt ... tgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
EST: gi|110694354|gb|EE071389.1|EE071389
EST:     TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAG                         GAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
genomic: TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAGgtaagcattt ... tgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
EST: gi|110701201|gb|EE078523.1|EE078523
EST:     TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAG                         GAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
genomic: TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAGgtaagcattt ... tgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
EST: gi|30124734|gb|CB910073.1|CB910073
EST:     TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAG                         GAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
genomic: TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAGgtaagcattt ... tgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
EST: gi|110422092|gb|EC988404.1|EC988404
EST:     TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAG                         GAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
genomic: TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAGgtaagcattt ... tgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
EST: gi|28962095|gb|CB341128.1|CB341128
EST:     TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAG                         GAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
genomic: TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAGgtaagcattt ... tgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
EST: gi|110729833|gb|EE106221.1|EE106221
EST:     TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAG                         GAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
genomic: TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAGgtaagcattt ... tgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
EST: gi|71858023|gb|DT007078.1|DT007078
EST:     TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAG                         GAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
genomic: TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAGgtaagcattt ... tgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
EST: gi|110698432|gb|EE075922.1|EE075922
EST:     TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAG                         GAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
genomic: TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAGgtaagcattt ... tgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
EST: gi|110730616|gb|EE107900.1|EE107900
EST:     TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAG                         GAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
genomic: TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAGgtaagcattt ... tgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
EST: gi|110708627|gb|EE086388.1|EE086388
EST:     TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAG                         GAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG
genomic: TTTTTGACAAGAGGATCTCGCAGGAGGTCAGTGGAGATGCCCTCGGAGAGgtaagcattt ... tgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actatcagactagatttatataacatttatttttgtttgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC
                 atataac  putative branch site (score: 3)
                                       tttgttt  putative PPT
          tagatttatataacat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcatttaccattgttatgcaatgccaaaattctactatcagactagatttatataacatttatttttgtttgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC