1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gctatccaaactccaattgcccacagttagagcagcagttttctttcaatcttggcgttgagacatttcagattttagacgaagtgaaattgacatacagGCGAAGACAGAGGAGCTGGTGACAGCTGATTATGCAGGAGACGGTGGATGGGGTGATGATGATCCCACGGTGTTTGTGATGACCGTCAATGTAGCCTTGG
species | Vitis vinifera |
transcript | Vv18s0001g05030.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGATTCGAAGCGGGTGCGAATCAAAGCACCTAATGGGTTCTTCTTACAG GCGAAGACAGAGGAGCTGGTGACAGCTGATTATGCAGGAGACGGTGGATGGEST: gi|37183912|gb|CF603266.1|CF603266
genomic: ATGATTCGAAGCGGGTGCGAATCAAAGCACCTAATGGGTTCTTCTTACAGgtgattggct ... tgacatacagGCGAAGACAGAGGAGCTGGTGACAGCTGATTATGCAGGAGACGGTGGATGG
EST: ATGATTCGAAGCGGGTGCGAATCAAAGCACCTAATGGGTTCTTCTTACAG GCGAAGACAGAGGAGCTGGTGACAGCTGATTATGCAGGAGACGGTGGATGGEST: gi|110699710|gb|EE076947.1|EE076947
genomic: ATGATTCGAAGCGGGTGCGAATCAAAGCACCTAATGGGTTCTTCTTACAGgtgattggct ... tgacatacagGCGAAGACAGAGGAGCTGGTGACAGCTGATTATGCAGGAGACGGTGGATGG
EST: ATGATTCGAAGCGGGTGCGAATCAAAGCACCTAATGGGTTCTTCTTACAG GCGAAGACAGAGGAGCTGGTGACAGCTGATTATGCAGGAGACGGTGGATGGEST: gi|71859163|gb|DT008218.1|DT008218
genomic: ATGATTCGAAGCGGGTGCGAATCAAAGCACCTAATGGGTTCTTCTTACAGgtgattggct ... tgacatacagGCGAAGACAGAGGAGCTGGTGACAGCTGATTATGCAGGAGACGGTGGATGG
EST: ATGATTCGAAGCGGGTGCGAATCAAAGCACCTAATGGGTTCTTCTTACAG GCGAAGACAGAGGAGCTGGTGACAGCTGATTATGCAGGAGACGGTGGATGG
genomic: ATGATTCGAAGCGGGTGCGAATCAAAGCACCTAATGGGTTCTTCTTACAGgtgattggct ... tgacatacagGCGAAGACAGAGGAGCTGGTGACAGCTGATTATGCAGGAGACGGTGGATGG
tcaatcttggcgttgagacatttcagattttagacgaagtgaaattgacatacagGCGAAGACAGAGGAGCTGGTGACAGCTGATTATGCAGGAGACGGTGGATGGGGTGATGATGATCCCACGGTGTTTGTGATGACCGTCAATGTAGCCTTGG
aattgac putative branch site (score: 3)
agatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctatccaaactccaattgcccacagttagagcagcagttttctttcaatcttggcgttgagacatttcagattttagacgaagtgaaattgacatacagGCGAAGACAGAGGAGCTGGTGACAGCTGATTATGCAGGAGACGGTGGATGGGGTGATGATGATCCCACGGTGTTTGTGATGACCGTCAATGTAGCCTTGG
- - -ccaaact
- - - - - - - - - gcccaca
- - - - - - - - - - - - - - - agcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtgaaa