1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtttaagtattatagaatacattattttattttctttttgtatgttttattgatgttcaactcatacttgtcttgtgattatttttgtttaccctttagCATAAACACAGTGTACTACATGGCACCTTTTGCAACCATGATCTTGGCAGTGCCAGCTATGGTACTTGAAGGTCCTGGTGTTATAGATTGGTTTCAAACT
species | Vitis vinifera |
transcript | Vv18s0001g02970.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAAGACCATACTTGCGGAGTCTTTGTTGCATGGATATAAATTTTGATAG CATAAACACAGEST: gi|71876674|gb|DT025729.1|DT025729
genomic: CAAAGACCATACTTGCGGAGTCTTTGTTGCATGGATATAAATTT-GATAGgtaatacctt ... taccctttagCATAAACACAG
EST: ACAAAGACCATACTTGCGGAGTCTTTGTTGCATGGATATAAATTTGATAG CATAAACACAGTGTACTACATGGCACCTTTTGCAACCATGATCTTGGCAGTEST: gi|110367070|gb|EC930991.1|EC930991
genomic: ACAAAGACCATACTTGCGGAGTCTTTGTTGCATGGATATAAATTTGATAGgtaatacctt ... taccctttagCATAAACACAGTGTACTACATGGCACCTTTTGCAACCATGATCTTGGCAGT
EST: ACAAAGACCATACTTGCGGAGTCTTTGTTGCATGGATATAAATTTGATAG CATAAACACAGTGTACTACATGGCACCTTTTGCAACCATGATCTTGGCAGTEST: gi|351048025|gb|FQ441197.1|FQ441197
genomic: ACAAAGACCATACTTGCGGAGTCTTTGTTGCATGGATATAAATTTGATAGgtaatacctt ... taccctttagCATAAACACAGTGTACTACATGGCACCTTTTGCAACCATGATCTTGGCAGT
EST: ACAAAGACCATACTTGCGGAGTCTTTGTTGCATGGATATAAATTTGATAG CCTAAACCCAGTGTACEST: gi|30137672|gb|CB923010.1|CB923010
genomic: ACAAAGACCATACTTGCGGAGTCTTTGTTGCATGGATATAAATTTGATAGgtaatacctt ... taccctttagCATAAACACAGTGTAC
EST: ACAAAGACCATACTTGCGGAGTCTTTGTTGCATGGATATAAATTTGATAG CATAAACACAGTGTACTACATGGCACCTTTTGCAACCATGATCTTGGCAGT
genomic: ACAAAGACCATACTTGCGGAGTCTTTGTTGCATGGATATAAATTTGATAGgtaatacctt ... taccctttagCATAAACACAGTGTACTACATGGCACCTTTTGCAACCATGATCTTGGCAGT
ttttattgatgttcaactcatacttgtcttgtgattatttttgtttaccctttagCATAAACACAGTGTACTACATGGCACCTTTTGCAACCATGATCTTGGCAGTGCCAGCTATGGTACTTGAAGGTCCTGGTGTTATAGATTGGTTTCAAACT
tattgat putative branch site (score: 3)
tttttgtttacccttt putative PPT
tgattatttttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttaagtattatagaatacattattttattttctttttgtatgttttattgatgttcaactcatacttgtcttgtgattatttttgtttaccctttagCATAAACACAGTGTACTACATGGCACCTTTTGCAACCATGATCTTGGCAGTGCCAGCTATGGTACTTGAAGGTCCTGGTGTTATAGATTGGTTTCAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - agaatac
- - - - - - - - - - - - - - - - - - - -tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - caactca