1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acacaagcaattttgattgaaaatatgaaaaggtattttctcatcatcctgtttacatgttatatggttgatgatctgccttctgtttcctttattgcagCATTACTACATGTGCATACATTGTTTTGCAATTTTCCAAGCTGTCATCAGAATCTGTACAAGATGCCATTTATCATGTCTTGTTGCGGAATCAAAGCAA
species | Vitis vinifera |
transcript | Vv18s0001g02460.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACAGGGTTAGTGCAATACTATGGACAATTCTGCTCGTGTGTTTTGGCAG CATTACTACATGTGCATACATTGTTTTGCAATTTTCCAAGCTGTCATCAGA
genomic: AACAGGGTTAGTGCAATACTATGGACAATTCTGCTCGTGTGTTTTGGCAGgtatgctcct ... tttattgcagCATTACTACATGTGCATACATTGTTTTGCAATTTTCCAAGCTGTCATCAGA
atcctgtttacatgttatatggttgatgatctgccttctgtttcctttattgcagCATTACTACATGTGCATACATTGTTTTGCAATTTTCCAAGCTGTCATCAGAATCTGTACAAGATGCCATTTATCATGTCTTGTTGCGGAATCAAAGCAA
ggttgat putative branch site (score: 5)
tctgccttctgtttcc putative PPT
tttacatgttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacaagcaattttgattgaaaatatgaaaaggtattttctcatcatcctgtttacatgttatatggttgatgatctgccttctgtttcctttattgcagCATTACTACATGTGCATACATTGTTTTGCAATTTTCCAAGCTGTCATCAGAATCTGTACAAGATGCCATTTATCATGTCTTGTTGCGGAATCAAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
-cacaagc
- - - - - - - - - gaaaata
- - - - - - - - - - - - - gaaaagg
- - - - - - - - - - - - - - - - - - - - -catcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - acatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttga