Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catcattgtcaccctccctttataagcactgttttctttggtgtctgtatgatttcaatgaagatgatatgcatttctgaatataatgttttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA

Basic information

species Vitis vinifera
transcript Vv18s0001g02260.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G11930.1 (Glycine max), 3'ss of exon 1
-catcattgtcaccctccctttataagcactgttttctttggtgtc-tgtatgatttcaatgaagatgatatgcatttctgaatataa-------tgtttt-ttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA
  |||| |              || ||     || | |||| | |  |  ||||| |  |  |   |  | |   | | | || | ||       ||||||   ||| ||||||||||||||||| ||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||||| | |||||||| ||
gtatcaatcaattgtgtttcggattaggctaattatgtttgattttatagatgatatgcacaattctattttatgtatgtaaaaacaaattacactgttttgcctttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGACAAGCCATTCATTTGCACAATGGATGCCATTGGAGCAAA

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G42830.1 (Glycine max), 3'ss of exon 1
------catcattgtcaccctccctttataagcactgttttct-ttggtgtc-tgtatgatttcaatgaagatgatatgcatttctgaatataatgtttt-ttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA
       ||||   ||    ||   ||||  ||||| || |   | | || | || || |||  | |  |  | |     |   ||||||| | | ||||   ||| ||||||||||||||||| ||||||||||| ||||||||| | |||||||| ||||| ||||||||||||||||||||| | |||||||| ||
gtatccaatcaaattctgtttcggattat--gcacttttatagatagatgacatgcataattctatttta--tcactctaaaaactgaatacattcttttgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGACAAACCATTCATTTGCACAATGGATGCCATTGGAGCAAA

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G24270.3 (Glycine max), 3'ss of exon 2
catca--ttgtcaccctccctttataagcactgttttctttggtgtctgtatgatttcaatgaa-gatgatatgcatttctgaatataatgttttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA
||  |   ||| |   |     | |      | ||||   | ||   |  |   |||    |||   ||| |   |  | ||  |      |||  |||| |||||||||||||| || ||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||  ||||| || ||
cagtaaactgtgagatttaaaattttcttgttattttaaattgttaataaactcttttttggaacagtgaaaacaaagtttgcgttct---tttgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G10130.1 (Glycine max), 3'ss of exon 2
catcattgtcaccctccctttataagcactgttttct-ttggtgtctgtatga-tttcaatgaagatgatatgcatttctgaatataatgttttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA
   || |    |      |||| ||      | || |  |  | | |  || |  |  |||   ||  |     |     |  |  | | |||  |||| ||||||||||||||||| || |||||||| ||||||||||| || ||||||||||| |||||||| |||||||||||||   |||| || ||
--acagtaaagcataagatttaaaattttcttgttatactaatttgttaataaactctaatttggaacagtgaaaacaaagtttgcattttttgcttttcagGTTTGGTCCATACTTTTGTCAGCCTGTAATTGCTGGATTAGGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G21720.1 (Arabidopsis thaliana), 3'ss of exon 3
-------------------------------------------------------catcattgtcaccctccct--ttataagcactgttttctttggtgtctgtatgatttcaatgaag-atgatatgcatttctgaatataatgttt---tttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA
                                                       |     ||   |   | ||  || |||     |||     || | |   ||   | ||  ||||  ||||| |  |    | |  | | || ||   || ||| || |||||||| ||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| || || ||||||||
gtcagtgtgcttgtgttgtttacttatgtagctgtattagttacctgttgatttgcgatgctgcttctgactctagttttaattctggttaggaatgatttgcttagtttgtctctgaatcatgatttagaaagataatcagattggttgctttatttcagATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGACAAGCCTTTCATTTGCACGATGGACTCTATCGGAGCCAA

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G77440.1 (Arabidopsis thaliana), 3'ss of exon 3
----------catcattgtcaccctccct-ttataagc----actgttttctttggtgtctgtatgatttcaatgaagatgatat--gcatttctgaatataatgtttttt-ttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA
            || |  || | |    | |||| ||     | | |  ||||     ||||  |  ||   || ||  ||  ||   || | || | ||  |  || ||| ||| || ||||| |||| ||| ||||| ||||||||||||||||||||||||||  |||| || ||||||||||| |||||||| |||||||||||
gttggtgaaatgtcttcttctctcaatttgttattagtttctagtttcctcttaacaatctgatttcttatgattaatgtggcattgccactactaagtaccaaattctttatttcagATTTGGCCCATTCTTGTGCCAACCTGTGATTGCTGGATTGGGAGATGATAACAAACCCTTCATTTGCACTATGGATTCTATTGGAGCCAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351025252|gb|FQ434265.1|FQ434265
EST:     AAGCCCGAAACCTTTGCAGGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|351043059|gb|FQ443901.1|FQ443901
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|110358622|gb|EC922965.1|EC922965
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|351036035|gb|FQ463880.1|FQ463880
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|351042763|gb|FQ431241.1|FQ431241
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|33406690|gb|CF212317.1|CF212317
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|351046593|gb|FQ453209.1|FQ453209
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|33406790|gb|CF212417.1|CF212417
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|110399653|gb|EC966170.1|EC966170
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|351015363|gb|FQ446242.1|FQ446242
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|349832596|gb|FQ421954.1|FQ421954
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|351045652|gb|FQ440837.1|FQ440837
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|349813662|gb|FQ413896.1|FQ413896
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|71889280|gb|DT038335.1|DT038335
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|71882433|gb|DT031488.1|DT031488
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|351048930|gb|FQ449773.1|FQ449773
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|110402513|gb|EC960313.1|EC960313
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|26257297|gb|CA808360.1|CA808360
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGGTTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|351054655|gb|FQ456852.1|FQ456852
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|26258189|gb|CA809252.1|CA809252
EST:     CTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGGTTGGGAGATGAAGA
genomic: CTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|351025704|gb|FQ426718.1|FQ426718
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|22011604|gb|BQ796638.1|BQ796638
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|351018791|gb|FQ425693.1|FQ425693
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|349809085|gb|FQ398085.1|FQ398085
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|349815197|gb|FQ400352.1|FQ400352
EST:     AAGCCCGAAACCTTCGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|349829265|gb|FQ419797.1|FQ419797
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|349829602|gb|FQ421120.1|FQ421120
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|351037207|gb|FQ457040.1|FQ457040
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|110689722|gb|EE066205.1|EE066205
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|349829652|gb|FQ421170.1|FQ421170
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|349808570|gb|FQ405714.1|FQ405714
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGACAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|110717244|gb|EE092941.1|EE092941
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|30125493|gb|CB910832.1|CB910832
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|110394987|gb|EC960457.1|EC960457
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGTTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|71890265|gb|DT039320.1|DT039320
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|110387657|gb|EC952341.1|EC952341
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|351045223|gb|FQ451671.1|FQ451671
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|349832955|gb|FQ423077.1|FQ423077
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|351018701|gb|FQ425603.1|FQ425603
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|110423662|gb|EC990010.1|EC990010
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|110700596|gb|EE077387.1|EE077387
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|110372541|gb|EC936718.1|EC936718
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|110362397|gb|EC925927.1|EC925927
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|30299742|gb|CB976536.1|CB976536
EST:     TCTTCTTTATGAG-AAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: TCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|349813934|gb|FQ414168.1|FQ414168
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|77578611|gb|DV218095.1|DV218095
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|110423854|gb|EC990205.1|EC990205
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|351029247|gb|FQ435447.1|FQ435447
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|110391604|gb|EC956591.1|EC956591
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|110715271|gb|EE093128.1|EE093128
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|71859023|gb|DT008078.1|DT008078
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|351031280|gb|FQ445305.1|FQ445305
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|294966117|gb|GW837484.1|GW837484
EST:     AGGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|110381521|gb|EC934688.1|EC934688
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|161706889|gb|FC056789.1|FC056789
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTACTCTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|349822039|gb|FQ408368.1|FQ408368
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCCCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
EST: gi|161720329|gb|FC071182.1|FC071182
EST:     AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAG                         GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA
genomic: AAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgct ... ttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatgatttcaatgaagatgatatgcatttctgaatataatgttttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA
                                         tgtttttttttt  CT-rich tract
                           atttctgaatataatg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catcattgtcaccctccctttataagcactgttttctttggtgtctgtatgatttcaatgaagatgatatgcatttctgaatataatgttttttttttagGTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- -cattgtc
- - - - - -ccctccc
- - - - - - - - - - - - - - - - - - - - -tgtctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgaa