1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaggttcccgaaccataataatggttttctcccttagtcacatctatttataattatcggaatcatgaggcttattgatatgatgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAAGCGGAGAACAAATGGTGGAGTAGATTGTTAAAGCAGGAAGGGAAACCAC
species | Vitis vinifera |
transcript | Vv18s0001g01940.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAAEST: gi|351013532|gb|FQ425563.1|FQ425563
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAAEST: gi|349825032|gb|FQ415579.1|FQ415579
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAAEST: gi|351025087|gb|FQ433504.1|FQ433504
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAAEST: gi|349812059|gb|FQ410856.1|FQ410856
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTGAAT GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAAEST: gi|110690904|gb|EE068398.1|EE068398
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAAEST: gi|351049075|gb|FQ431619.1|FQ431619
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAAEST: gi|351014311|gb|FQ437313.1|FQ437313
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAAEST: gi|110729569|gb|EE105653.1|EE105653
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAAEST: gi|351049132|gb|FQ449854.1|FQ449854
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAAEST: gi|110426354|gb|EC992760.1|EC992760
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAAEST: gi|351012422|gb|FQ427023.1|FQ427023
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAAEST: gi|33403447|gb|CF209074.1|CF209074
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAAEST: gi|351046326|gb|FQ448631.1|FQ448631
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAAEST: gi|349825031|gb|FQ415578.1|FQ415578
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
tcacatctatttataattatcggaatcatgaggcttattgatatgatgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAAGCGGAGAACAAATGGTGGAGTAGATTGTTAAAGCAGGAAGGGAAACCAC
tattgat putative branch site (score: 3)
tctatttataattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttcccgaaccataataatggttttctcccttagtcacatctatttataattatcggaatcatgaggcttattgatatgatgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAAGCGGAGAACAAATGGTGGAGTAGATTGTTAAAGCAGGAAGGGAAACCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG