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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatcgtcttccccaacaccgatattaggagaagatttgtattaagaaaaccatgttcccctgcaccccattcttcatgtaaatcaatatcatttctttttgcttctaagtgtgtttttggaaatctactttgtggaatttatctttgttgtcaaaatgaactctaaacagACAACTGGTTCCCTCTACTTCTGGGCTGCCCATTTGGCCGGACCCAGATGGGGGCCATTCGCGTCGTGGTGCTGTGCATGGCTCGAGGCCATAGGCCTCA

Basic information

species Vitis vinifera
transcript Vv18s0001g01850.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g01850.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G136508_T02 (Zea mays), 3'ss of exon 2
gtaagtatcgtcttccccaacaccgatattaggagaagatttgtattaagaaaaccatgttcccctgcaccccattcttcatgtaaatcaatatcatttctttttgcttctaagtgtgtttttggaaatctactttgtggaatttatctttgttgtcaaaatgaactctaaacagACAACTGGTTCCCTCTACTTCTGGGCTGCCCATTTGGCCGGACCCAGATGGGGGCCATTCGCGTCGTGGTGCTGTGCATGGCTCGAGGCCATAGGCCTCA
                                                         |  |   || | |  ||| |||| | | |   |   |  ||  ||| ||     |  ||||  |   || | |   |||      ||  ||||| || |  | |           ||||| |||||||| || || ||||||||||| |||||||| || ||    ||||| || || ||||| |||||||| || ||||| |||||||| |||||||
---------------------------------------------------------tacttgtcttc-cttcatccttcttctgagaaaggcttgttggtttctggccacatatgtgcgtactgaca-cagtttt------ttcttctttctttttgaga----------gcagACCACTGGTTCTCTGTATTTCTGGGCTGCACATTTGGCAGGTCCAGTCTGGGGTCCGTTGGCGTCTTGGTGCTGCGCTTGGCTGGAGGCCATCGGCCTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggaaatctactttgtggaatttatctttgttgtcaaaatgaactctaaacagACAACTGGTTCCCTCTACTTCTGGGCTGCCCATTTGGCCGGACCCAGATGGGGGCCATTCGCGTCGTGGTGCTGTGCATGGCTCGAGGCCATAGGCCTCA
                    aatttatctttgtt  TA-rich tract