Sequence
atgc intronic sequence ATGC exonic sequence...agagggatggaatacttacattcttgatgactaaagctctttaatattgactgtttttcttttttcttttttttcttttgtttgtttggcttgtgataagATGGAATTCTGCTTCTTGAGGTCAACAGGATGCTAAGGGCAGGAGGATACTTTGCTTGGGCTGCACAGCCTGTTTATAAACATGAAGGGAACCTCCAAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os01g62800.1 (Oryza sativa), 3'ss of exon 3
agagggatggaatacttacattcttgatgactaaagctctttaatattgactgtttttcttttttcttttttttcttttgtttgtttggcttgtgataagATGGAATTCTGCTTCTTGAGGTCAACAGGATGCTAAGGGCAGGAGGATACTTTGCTTGGGCTGCACAGCCTGTTTATAAACATGAAGGGAACCTCCAAGA
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attgttttcaacaaaatatcaacacaaagataactgttttttgtagcaccctgacttccaatttgcttaacttttgttgccatgatttgccactttaaagATGGAATCCTGCTTCTGGAGGTTAATAGAATGCTCAGAGCCGGCGGTTATTTTGCTTGGGCAGCACAGCCTGTTTATAAGCATGAAGAGGCTCAGCAAGA
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G042295_T01 (Zea mays), 3'ss of exon 3
agagggatggaatacttacatt----cttgatgactaaagctctttaatattgactgtttttcttt-----tttcttttttttcttttgtttgtttggcttgtgataagATGGAATTCTGCTTCTTGAGGTCAACAGGATGCTAAGGGCAGGAGGATACTTTGCTTGGGCTGCACAGCCTGTTTATAAACATGAAGGGAACCTCCAAGA
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---------atatctttacatttaaacttgatcgcaaatatgatgtgccactcatctatgtactttccaagtttgcctaagttttgttatcatatttgtttatttggagATGGTATCCTGCTCCTGGAGGTTAATAGATTACTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCACAACCTGTTTATAAGCATGAACAGGCCCAACAAGA
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G092120_T02 (Zea mays), 3'ss of exon 3
agagggatggaatacttacattcttgatgactaaagctctttaatattgactgt-----ttttcttttttcttttttttcttttgtttgtttggcttgtgataagATGGAATTCTGCTTCTTGAGGTCAACAGGATGCTAAGGGCAGGAGGATACTTTGCTTGGGCTGCACAGCCTGTTTATAAACATGAAGGGAACCTCCAAGA
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-----tttcatttaaacttgatctcaaaggtatgtgcacttatctatgtactttccaaatttgcctaagttttgtacttttgttatcatatttgtttatttgaagATGGTATCCTGCTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCCCAACCTGTTTATAAGCATGAAGAGGCCCAACAAGA
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G09520.1 (Glycine max), 3'ss of exon 3
--agagggatggaatacttacattcttgatgactaaagctctttaatattgactgtttttcttttttcttttttttcttttgtttgtttggcttgtgataagATGGAATTCTGCTTCTTGAGGTCAACAGGATGCTAAGGGCAGGAGGATACTTTGCTTGGGCTGCACAGCCTGTTTATAAACATGAAGGGAACCTCCAAGA
|| ||| | ||| || | | | | | | || | || | |||||| | || | ||| ||| | | | |||| |||||||||| |||||||||||| ||||||| | || ||||| || || ||||||| ||||| |||||||||||||| |||||||||| || ||| |||||
tgtgaatttaagaaaaattagatacaaatacaatcacaattatgcttaaaggctttagttctttgtactgatgttttgtttttataat--gctttactggagATGGAATTTTGCTTCTTGAGGCCAACAGGCTCCTGAGGGCGGGTGGCTACTTTGTCTGGGCAGCACAGCCTGTTTACAAACATGAAGAGACCCTTCAAGA
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G24900.1 (Glycine max), 3'ss of exon 3
agagggatggaatacttacattcttgatgac-taaagctctttaatattgactgtttttcttttttcttttttttcttttgtttgtttggcttgtgataagATGGAATTCTGCTTCTTGAGGTCAACAGGATGCTAAGGGCAGGAGGATACTTTGCTTGGGCTGCACAGCCTGTTTATAAACATGAAGGGAACCTCCAAGA
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-actcgacgaatttaagaaaatttggataaaattacgatcacaattatgcttaatccagttcttagtactgatgttctgtttttatattgctttaatggagATGGAATTTTGCTTCTTGAGGCCAACAGGCTCCTGCGAGCGGGTGGCTACTTTGTCTGGGCTGCACAGCCTGTTTACAAACATGAAGAGACCCTTCAAGA
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G77260.1 (Arabidopsis thaliana), 3'ss of exon 3
agagggatggaatacttacatt---cttgatgactaaagctctttaatattgactgtttttcttttttcttttttttcttttgtttgtttggcttgtgataagATGGAATTCTGCTTCTTGAGGTCAACAGGATGCTAAGGGCAGGAGGATACTTTGCTTGGGCTGCACAGCCTGTTTATAAACATGAAGGGAACCTCCAAGA
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------gttaatttctggctttttgcttctcctctaatgttatttgagctttagcatagtaagtgactacagcattt----tgtttctatgaattacac--agATGGGATACTTCTTCTTGAAGTTAATAGAATGCTTAGAGCAGGAGGCTACTTTGTTTGGGCTGCACAACCCGTTTACAAACATGAGGATAACTTGCAAGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37187347|gb|CF606700.1|CF606700EST: TTTTGACTTGATACATTGCTCAAGATGTAGAATTAATTGGACCCGTGATG ATGGAATTCTGCTTCTTGAGGTCAACAGGATGCTAAGG
genomic: TTTTGACTTGATACATTGCTCAAGATGTAGAATTAATTGGACCCGTGATGgtatgccccc ... ttgtgataagATGGAATTCTGCTTCTTGAGGTCAACAGGATGCTAAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgactgtttttcttttttcttttttttcttttgtttgtttggcttgtgataagATGGAATTCTGCTTCTTGAGGTCAACAGGATGCTAAGGGCAGGAGGATACTTTGCTTGGGCTGCACAGCCTGTTTATAAACATGAAGGGAACCTCCAAGA
tttttcttttttcttt CT-rich tract
tttttcttttttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agagggatggaatacttacattcttgatgactaaagctctttaatattgactgtttttcttttttcttttttttcttttgtttgtttggcttgtgataagATGGAATTCTGCTTCTTGAGGTCAACAGGATGCTAAGGGCAGGAGGATACTTTGCTTGGGCTGCACAGCCTGTTTATAAACATGAAGGGAACCTCCAAGA
- -gggatgg
- - - - - - - - - - - - tgatgac