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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatgtttttgtccttttcgtttgttgttttataaaagaaagggtagcattattgatgtttgaatacctataaaatttctggataacgagttcctgtttttcagGCGGATAATATTCCGGAGATTCGACGAGCGTCAGCATTTGGAGTTCTTTCCGGCGTTGGATCATCTGCATTCGTTTGCGGGACTCTCTCTGCTCGTTTTC

Basic information

species Vitis vinifera
transcript Vv18s0001g00800.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71863626|gb|DT012681.1|DT012681
EST:     CTTCTATGGTTTGCGAAGGAAGCGTACACTGCCTCACCCTGGCTTATGTG                         GCGGATAATATTCCGGAGATTCGACGAGCGTCAGCATTTGGAGTT
genomic: CTTCTATGGTTTGCGAAGGAAGCGTACACTGCCTCACCCTGGCTTATGTGgtaaaatgtt ... tgtttttcagGCGGATAATATTCCGGAGATTCGACGAGCGTCAGCATTTGGAGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattgatgtttgaatacctataaaatttctggataacgagttcctgtttttcagGCGGATAATATTCCGGAGATTCGACGAGCGTCAGCATTTGGAGTTCTTTCCGGCGTTGGATCATCTGCATTCGTTTGCGGGACTCTCTCTGCTCGTTTTC
                               ggataac  putative branch site (score: 3)
                                         ttcctgtttttc  putative PPT
             aatacctataaaattt  TA-rich tract