1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctggaaatggatatatgacttaattgagggaatatggtagtgatatcatttatccttgaggcactttgtctgatctacatatgttatatgcttaatttagGTTCACCGAGCAAGATTGAGAGGTGATAAAAATGATGTTGTTGTCAAG
species | Vitis vinifera |
transcript | Vv17s0000g10260.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATTTGAAAGATTTGATGTGGATCCAATTGGTTCTGCTTCAATTGCACAG GTTCACCGAGCAAGATTGAGAGGTGATAAAAATGATGTTGTTGTCAAGEST: gi|351027374|gb|FQ444623.1|FQ444623
genomic: TATTTGAAAGATTTGATGTGGATCCAATTGGTTCTGCTTCAATTGCACAGgtgcttctct ... cttaatttagGTTCACCGAGCAAGATTGAGAGGTGATAAAAATGATGTTGTTGTCAAG
EST: TATTTGAAAGATTTGATGTGAATCCAATTGGTTCTGCTTCAATTGCACAG GTTCACCGAGCAAGATTGAGAGGTGATAAAAATGATGTTGTTGTCAAGEST: gi|351016236|gb|FQ446096.1|FQ446096
genomic: TATTTGAAAGATTTGATGTGGATCCAATTGGTTCTGCTTCAATTGCACAGgtgcttctct ... cttaatttagGTTCACCGAGCAAGATTGAGAGGTGATAAAAATGATGTTGTTGTCAAG
EST: TATTTGAAAGATTTGATGTGGATCCAATTGGTTCTGCTTCAATTGCACAG GTTCACCGAGCAAGATTGAGAGGTGATAAAAATGATGTTGTTGTCAAG
genomic: TATTTGAAAGATTTGATGTGGATCCAATTGGTTCTGCTTCAATTGCACAGgtgcttctct ... cttaatttagGTTCACCGAGCAAGATTGAGAGGTGATAAAAATGATGTTGTTGTCAAG
tcatttatccttgaggcactttgtctgatctacatatgttatatgcttaatttagGTTCACCGAGCAAGATTGAGAGGTGATAAAAATGATGTTGTTGTCAAG
gcttaat putative branch site (score: 4)
atatgttatatgctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggaaatggatatatgacttaattgagggaatatggtagtgatatcatttatccttgaggcactttgtctgatctacatatgttatatgcttaatttagGTTCACCGAGCAAGATTGAGAGGTGATAAAAATGATGTTGTTGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - aaatgga
- - - - - - - - - - - - - agggaata
- - - - - - - - - - - - - - - - - -ggtagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtctga