Sequence
atgc intronic sequence ATGC exonic sequence...tttattattaatatctgatagcagtgatgatatttgtagcaagagaattgctattctgtttgtatggcttcgctaatgtcctcttcttccttggtaacagATGGTGCTGGTGGTAAGGGAACATGGGGAAAACTGCTTGACACTGATGGTGAGTCACATATTGATCGAAATGATCCCAACTATGATAGCGGCGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g09870.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G02910.1 (Glycine max), 3'ss of exon 2
----tttattattaatatctgatagcagtgatgatatt-tgtagcaagagaattgctattctgtttgtatggcttcgctaatgtcctcttcttccttggtaacagATGGTGCTGGTGGTAAGGGAACATGGGGAAAACTGCTTGACACTGATGGTGAGTCACATATTGATCGAAATGATCCCAACTATGATAGCGGCGAG
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agctttcttttgcaatatc-aatatc--tgatgatagaatatgcttttgggtttataatgatcttcatatggtaat-ttgatgttctttatcttggggatg-cagATGGTGCTGGTGGTAAGGGTACTTGGGGAAAATTGCTTGATACAGATATTGTTTCTCACATAGACCGGCATGATCCAAATTATGACAGTGGCGAG
upper sequence: Vv17s0000g09870.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G13570.1 (Glycine max), 3'ss of exon 2
-tttattattaatatctgatagcagtgatgatatttgtagcaagagaattgctattctgtttgtatggcttcgctaatgtcctcttcttccttggtaacagATGGTGCTGGTGGTAAGGGAACATGGGGAAAACTGCTTGACACTGATGGTGAGTCACATATTGATCGAAATGATCCCAACTATGATAGCGGCGAG
| || ||||| | |||| || | | || |||||||||||||||||||||| || ||||||||| ||||||| || ||| ||| || || || || || |||||||| || ||||| || ||||||
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtcttcatatggtaat-ttgatgttctttatctatggggatgcagATGGTGCTGGTGGTAAGGGTACTTGGGGAAAATTGCTTGATACAGATATTGATTCTCACATAGACCGGAATGATCCAAATTATGACAGTGGCGAG
upper sequence: Vv17s0000g09870.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G36570.1 (Glycine max), 3'ss of exon 2
---tttattattaatatctgatagcagtgatgatatttgtagcaagagaattgctattctgtttgtatg-gcttcgctaatgtcctcttcttccttggtaacagATGGTGCTGGTGGTAAGGGAACATGGGGAAAACTGCTTGACACTGATGGTGAGTCACATATTGATCGAAATGATCCCAACTATGATAGCGGCGAG
||| ||| | | || | | | |||| || | || || | || | | || | | | |||| || | || | | |||| ||||||||||||||||| || ||||| ||| ||||||| || |||||||| || | ||| || || ||||| ||||||||||||||||||
agtttttttacttgcag-tgtcaatact--tgatgttacgatttgctttgtttctttgtggtctttgtgtgataatttgatgtgctgtatctcttgaatg-cagACGGTGCTGGTGGTAAGGGCACTTGGGGGAAATTGCTTGATACAGATGGTGAATCCCGTATAGACAAGAACGATCCAAACTATGATAGCGGCGAG
upper sequence: Vv17s0000g09870.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G63190.2 (Arabidopsis thaliana), 3'ss of exon 2
-------------------------------------------------------------------------------tttattattaata---tctgatagcagtgatgatatttgtagcaagagaattgctattctgtttgtatggcttcgctaatgtcctcttcttccttggtaacagATGGTGCTGGTGGTAAGGGAACATGGGGAAAACTGCTTGACACTGA---TGGTGAGTCACATATTGATCGAAATGATCCCAACTATGATAGCGGCGAG
|| || ||| | | | | | | ||| || | ||| || | | | ||| || | | | | | | | |||| ||||||||||| || ||||| |||||||| || ||||||||||| |||||| || ||||||| ||||||||||| || ||||| || |||
gtattaaactttcttcaaccttttgtgcttgttatttggctaatagatccttttagggagtgatatgactctttattagttcctttcaaatttgctttagtgaaaagacttaagttttcagtagaagagtt-caagtgtgtaggtgatatatggtttacttatgtggcaatgatatctgcagAGGGTGCTGGTGGCAAAGGAACTTGGGGAAAGCTTCTTGACACTGATGATGGTGACTCCTGTATTGATAAGAATGATCCCAATTACGATAGTGGAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110384166|gb|EC948585.1|EC948585EST: GAGGCATGTGCGTCGCTCACACTCCGGGAAGTTTGTTAGGGTTAAGAAGG ATGGTGCTGGTGGTAAGGGAACATGGGGAAAACTGCTTGACACTGATGGTG
genomic: GAGGCATGTGCGTCGCTCACACTCCGGGAAGTTTGTTAGGGTTAAGAAGGgtaagtaggc ... ttggtaacagATGGTGCTGGTGGTAAGGGAACATGGGGAAAACTGCTTGACACTGATGGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattgctattctgtttgtatggcttcgctaatgtcctcttcttccttggtaacagATGGTGCTGGTGGTAAGGGAACATGGGGAAAACTGCTTGACACTGATGGTGAGTCACATATTGATCGAAATGATCCCAACTATGATAGCGGCGAG
cgctaat putative branch site (score: 3)
tgtcctcttcttcctt CT-rich tract
tttgtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttattattaatatctgatagcagtgatgatatttgtagcaagagaattgctattctgtttgtatggcttcgctaatgtcctcttcttccttggtaacagATGGTGCTGGTGGTAAGGGAACATGGGGAAAACTGCTTGACACTGATGGTGAGTCACATATTGATCGAAATGATCCCAACTATGATAGCGGCGAG
- - - - - - - ctgatag
- - - - - - - - - - - - - - - - - - - - aagagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatgg