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...taaaaacatctcttttggaaaatgtctcatgttctcctcagcttctcttcaatagaaagaacatataatagaacatttatttggttttctggtgctgcagACTCTGGATGGGAGAACGATCAGAGTAAATGTAGCTGAGGAAAGACCCAGGCGCAGTGCCTTCTGAGATGAGATGAGATGAATTCTCAATTTCCTGTGGC
species | Vitis vinifera |
transcript | Vv17s0000g09680.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTCTAGCCAAACTGAATTGGAAGATGCCATTGCAGCCACCGATGGACAG ACTCTGGATGGGAGAACGATCAGAGTAAATGTAGCTGAGGAAAGACCCAGGEST: gi|349809071|gb|FQ407520.1|FQ407520
genomic: TGTCTAGCCAAACTGAATTGGAAGATGCCATTGCAGCCACCGATGGACAGgtactttttc ... ggtgctgcagACTCTGGATGGGAGAACGATCAGAGTAAATGTAGCTGAGGAAAGACCCAGG
EST: TGTCTAGCCAAACTGAATTGGAAGATGCCATTGCAGCCACCGATGGACAG ACTCTGGATGGGAGAACGATCAGAGTAAATGTAGCTGAGGAAAGACCCAGG
genomic: TGTCTAGCCAAACTGAATTGGAAGATGCCATTGCAGCCACCGATGGACAGgtactttttc ... ggtgctgcagACTCTGGATGGGAGAACGATCAGAGTAAATGTAGCTGAGGAAAGACCCAGG
tcttcaatagaaagaacatataatagaacatttatttggttttctggtgctgcagACTCTGGATGGGAGAACGATCAGAGTAAATGTAGCTGAGGAAAGACCCAGGCGCAGTGCCTTCTGAGATGAGATGAGATGAATTCTCAATTTCCTGTGGC
ttttctg CT-rich tract
aaagaacatataatag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaaacatctcttttggaaaatgtctcatgttctcctcagcttctcttcaatagaaagaacatataatagaacatttatttggttttctggtgctgcagACTCTGGATGGGAGAACGATCAGAGTAAATGTAGCTGAGGAAAGACCCAGGCGCAGTGCCTTCTGAGATGAGATGAGATGAATTCTCAATTTCCTGTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
-aaaaaca
- - - - - - - - ggaaaat
- - - - - - - - - - - - -ctcatgt
- - - - - - - - - - - - - - - - tctcctc
- - - - - - - - - - - - - - - - - - - - - - - - - aatagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaa