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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtattatcaccagtttctttaattataatcttctgcatcatttagggcttgtctatgagttttgtattatgtggtttcttgagccacctctcaagggagtggtttttcttcccccatcttaaatgcaagccccatgctttctttttccttcttgcagGCATTTGCTCAAGTTCCAAATTTAAACATATGGTATGGACCTGATACCTACATGGGTGCAAACATTAGGGAGTTGCTTCAGCAAATGACTACAATGACTG

Basic information

species Vitis vinifera
transcript Vv17s0000g09490.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g09490.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G13410.1 (Glycine max), 3'ss of exon 3
gttggtattatcaccagtttctttaattataatcttctgcatcatttagggcttgtctatgagttttgtattatgtggtttcttgagccacctctcaagggagtggtttttcttcccccatcttaaatgcaagccccatgctttctttttccttcttgcagGCATTTGCTCAAGTTCCAAATTTAAACATATGGTATGGACCTGATACCTACATGGGTGCAAACATTAGGGAGTTGCTTCAGCAAATGACTACAATGACTG
||||||   || || |  || |||  ||       ||||  |  || | |||     ||||| |   | || |  || |        ||| | |  |       |    ||   |||     ||||||         ||   ||  |     ||  ||||||||||||||||||||||| |||| | |||||  |||||||||||| | |||||||||||||| || |  || ||| | || |||||||| | ||||||||
gttggtcagat-acaaactttttttgttcc---tctctgactttttaatggcca---tatgaat---gcatcacatgat------gaccatcaccaa-------gcccatttagccctttatttaaata--------atatattggtccatatttatgcagGCATTTGCTCAAGTTCCAGATTTTAGCATATTTTATGGACCTGATTCTTACATGGGTGCAAATATCAAAGATTTGTTCCAACAAATGACAAAAATGACTG

upper sequence: Vv17s0000g09490.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G02710.1 (Glycine max), 3'ss of exon 3
gttggtattatcaccagtttctttaattataatcttctgcatcatttagggcttgtctatgagttttgtattatgtggtttcttgagccacctctcaagggagtggtttttcttcccccatcttaaatgcaagccccatgctttctttttccttcttgcagGCATTTGCTCAAGTTCCAAATTTAAACATATGGTATGGACCTGATACCTACATGGGTGCAAACATTAGGGAGTTGCTTCAGCAAATGACTACAATGACTG
|||||| | || || |  || ||| |||     | |||| |   ||||  | |  |  |||| |   | || |  || |        ||| | |         ||    ||    ||    |||||||         ||   ||  |     ||  ||||||||||||||||||||||| |||| | |||||  |||||||||||| | |||||||||||||| || |  || ||| | || |||||||| | ||||||||
gttggtctgat-acaaactttttttatt-----cctctg-actttttaatggtcat--atgaat---gcatcacatgat------gaccatcacc-------atgcccatttagtcctttccttaaata--------atatattggtccatatttatgcagGCATTTGCTCAAGTTCCAGATTTGAGCATATTTTATGGACCTGATTCTTACATGGGTGCAAATATCAAAGATTTGTTCCAACAAATGACAAAAATGACTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcttcccccatcttaaatgcaagccccatgctttctttttccttcttgcagGCATTTGCTCAAGTTCCAAATTTAAACATATGGTATGGACCTGATACCTACATGGGTGCAAACATTAGGGAGTTGCTTCAGCAAATGACTACAATGACTG
                           ccccatgctttctttt  CT-rich tract
             atcttaaat  TA-rich tract