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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttgtgttaattatgtggatagtagaatatagcattgcctgttttcaagaaacttatccattgcagatcctgatgttatcatcttgtcatagTTTGATTATTTAAGGAGCTTGGAAATTGAAGAGAAGATTAACAAAGTAAGATGGTGTGCAACACCCAACGAATCACTATTTATTCTTTCAACAAATGACA

Basic information

species Vitis vinifera
transcript Vv17s0000g08730.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g08730.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G35860.2 (Glycine max), 3'ss of exon 3
gtatgctttgtgtt-aattatgtggatagtag--aatatagcattgcctgttttcaagaaacttatccattgcagatcctgatgttatcatcttgtcatagTTTGATTATTTAAGGAGCTTGGAAATTGAAGAGAAGATTAACAAAGTAAGATGGTGTGCAACACCCAACGAATCACTATTTATTCTTTCAACAAATGACA
  |    |  | || || || ||      ||   | || || | | |   | ||  |  |      | |||        |  | ||||    || |  |||||||||||  | | |||  ||||||||||||||||||||||||||||||| |||||     |   | ||   |  | ||||||||||||||| || ||||
acaaaactgatatttaaataagttttctctaatcattacagtagttcaattctttcaccactactactattattataattattattattggtttat-gtagTTTGATTACCTGAAGAGTGTGGAAATTGAAGAGAAGATTAACAAAGTAAGGTGGTGGATGTCCAACGACAGTTTGCAATTTATTCTTTCAACCAACGACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgttttcaagaaacttatccattgcagatcctgatgttatcatcttgtcatagTTTGATTATTTAAGGAGCTTGGAAATTGAAGAGAAGATTAACAAAGTAAGATGGTGTGCAACACCCAACGAATCACTATTTATTCTTTCAACAAATGACA
                              tcctgat  putative branch site (score: 3)
                                         tcatctt  putative PPT
            aaacttat  TA-rich tract