1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtatggtgcaattatcattagataattatgataaagatgacagaatactgtcttgtcagtttatgctataggaactaccaacactgtaagttattatttgcggcattccttatgtggctattcttttgtacagTATGTGCCATGCGTGGAGGATACTGTTCTTGGAATTGTGGTAGATTCTAAAGCAGAT
species | Vitis vinifera |
transcript | Vv17s0000g08490.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTGGAAAGCTCCCAAAAGAGG TATGTGCCATGCGTGGAGGATACTGTTCTTGGAATTGTGGTAGATTCTAAAEST: gi|27755420|gb|CB036175.1|CB036175
genomic: GGTGGAAAGCTCCCAAAAGAGGgtgagtatgg ... ttttgtacagTATGTGCCATGCGTGGAGGATACTGTTCTTGGAATTGTGGTAGATTCTAAA
EST: TAAGGTTCTCAAAGCCCAATAAATATTGGGTGGAAAGCTCCCAAAAGAGG TATGTGCCATGCGTGGAGGATACTGTTCTTGGAATTGTGGTAGATTCTAAAEST: gi|34550415|gb|CF518633.1|CF518633
genomic: TAAGGTTCTCAAAGCCCAATAAATATTGGGTGGAAAGCTCCCAAAAGAGGgtgagtatgg ... ttttgtacagTATGTGCCATGCGTGGAGGATACTGTTCTTGGAATTGTGGTAGATTCTAAA
EST: TAAGGTTCTCAAAGCCCAATAAATATTGGGTGGAAAGCTCCCAAAAGAGG TATGTGCCATGCGTGGAGGATACTGTTCTTGGAATTGTGGTAGATTCTAAAEST: gi|110408373|gb|EC974008.1|EC974008
genomic: TAAGGTTCTCAAAGCCCAATAAATATTGGGTGGAAAGCTCCCAAAAGAGGgtgagtatgg ... ttttgtacagTATGTGCCATGCGTGGAGGATACTGTTCTTGGAATTGTGGTAGATTCTAAA
EST: AAGCTCCCAAAAGAGG TATGTGCCATGCGTGGAAGATACTGTTC-TGGAAATTGTGGTAGATTCTAA
genomic: AAGCTCCCAAAAGAGGgtgagtatgg ... ttttgtacagTATGTGCCATGCGTGGAGGATACTGTTCTTGG-AATTGTGGTAGATTCTAA
caacactgtaagttattatttgcggcattccttatgtggctattcttttgtacagTATGTGCCATGCGTGGAGGATACTGTTCTTGGAATTGTGGTAGATTCTAAAGCAGAT
ctattctttt CT-rich tract
tgtaagttattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatggtgcaattatcattagataattatgataaagatgacagaatactgtcttgtcagtttatgctataggaactaccaacactgtaagttattatttgcggcattccttatgtggctattcttttgtacagTATGTGCCATGCGTGGAGGATACTGTTCTTGGAATTGTGGTAGATTCTAAAGCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT