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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaaaaatattctggaaataacatatcttgtaataagaaagtagtgttcatgttaatcactcttgccgattgctattgaataattgatttatctgcaaactttttgttagGAATTTCGAGAAGGAGTTACATCCTTTTGAATCAAGAAGCTTACAATTACAATTCTCAAATGCTCTCTCTCTTCCAGTATTCACTGGTACTCGAATTGAA

Basic information

species Vitis vinifera
transcript Vv17s0000g07780.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71862869|gb|DT011924.1|DT011924
EST:     AAAGAGGAAGTTGAAACGGCTCTGAGAAAGCATTTAAGCAATATGAAGCG                         GAATTTCGAGAAGGAGTTACATCCTTTTGAATCAAGAAGCTTACAATTACA
genomic: AAAGAGGAAGTTGAAACGGCTCTGAGAAAGCATTTAAGCAATATGAAGCGgtaaggaaaa ... tttttgttagGAATTTCGAGAAGGAGTTACATCCTTTTGAATCAAGAAGCTTACAATTACA
EST: gi|161711826|gb|FC058746.1|FC058746
EST:     AAAGAGGAAGTTGAAACGGCTCTGAGAAAGCATTTAAGCAATATGAAGCG                         GAATTTCGAGAAGGAGTTACATCCTTTTGAATCAAGAAGCTTACAATTACA
genomic: AAAGAGGAAGTTGAAACGGCTCTGAGAAAGCATTTAAGCAATATGAAGCGgtaaggaaaa ... tttttgttagGAATTTCGAGAAGGAGTTACATCCTTTTGAATCAAGAAGCTTACAATTACA
EST: gi|29783947|gb|CB344097.2|CB344097
EST:     AAAGAGGAAGTTGAAACGGCTCTGAGAAAGCATTTAAGCAATATGAAGCG                         GAATTTCGAGAAGGAGTTACATCCTTTTGAATCAAGAAGCTTACAATTACA
genomic: AAAGAGGAAGTTGAAACGGCTCTGAGAAAGCATTTAAGCAATATGAAGCGgtaaggaaaa ... tttttgttagGAATTTCGAGAAGGAGTTACATCCTTTTGAATCAAGAAGCTTACAATTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcactcttgccgattgctattgaataattgatttatctgcaaactttttgttagGAATTTCGAGAAGGAGTTACATCCTTTTGAATCAAGAAGCTTACAATTACAATTCTCAAATGCTCTCTCTCTTCCAGTATTCACTGGTACTCGAATTGAA
                                            ctttttgtt  CT-rich tract
                  tattgaataattgatt  TA-rich tract