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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgacagtgcccatagactcctatactttttctggaacatgcatgaaagttatgaaaaatcccttttcattttgaatatgcatgttccattgctgaactcagtgcttgtcatacagGTTATGCTAACTGATTTTGGACTGGCAAAAGAAATTGATGAGTCAAGCAGATCTAATTCAATGTGTGGAACCACAGAATACATGGCTCCAGAAATCTTAC

Basic information

species Vitis vinifera
transcript Vv17s0000g07520.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g07520.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G01620.1 (Glycine max), 3'ss of exon 3
gtaatgacagtgcccatagactcctatactttttctggaacatgcatgaaagtta-tgaaaaatcccttttcattttgaatatgcatgttccattgctgaactcagtgcttgtcatacagGTTATGCTAACTGATTTTGGACTGGCAAAAGAAATTGATGAGTCAAGCAGATCTAATTCAATGTGTGGAACCACAGAATACATGGCTCCAGAAATCTTAC
                     |  ||    |  |||     ||   | ||  | | ||  | |     ||  |      |  || ||  | ||    |||  |  |  ||     || |||| ||||||| ||||||||||||| ||||||| |||||||| |   | |||||||| |   | ||||| ||   |||||||||||||||||||||| |||
--------------------ttgttaacactcctcttcccgatatgtcaagttcactgttagaatatcttggaagacagaggtgtattattcaactttgatgtttgctctgcctgtatagGTCATGCTAATTGATTTTGGACTGTCAAAAGAGATTGATGAATTGGGAAGATCTAACTGTTTTTGTGGGACTGTAGAATACATGGCTCCAGAAATCCTAC

upper sequence: Vv17s0000g07520.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G10270.1 (Glycine max), 3'ss of exon 3
gtaatgacagtgcccatagactcctatactttttctggaacatgcatgaaagttatgaaaaatcccttttcattttgaatatgcatgttccattgctgaactcagtgcttgtcatacagGTTATGCTAACTGATTTTGGACTGGCAAAAGAAATTGATGAGTCAAGCAGATCTAATTCAATGTGTGGAACCACAGAATACATGGCTCCAGAAATCTTAC
                |   | |   | || || |||  |  | || |     | | | || |  |||   |   ||| | || ||  | ||    | |  |  |  ||     || |||| ||||||||||||||||||||| ||||||| ||| |||| |   | ||||| || ||  | ||||| ||   |||||||||||||||||||||| |||
---------------gttagcactcct-ctcttcctgatatgt-caagttcactgttagaa-tatcttgaaagactgagt-tgtattattcaactttaatatttgctctgcctgtatagGTCATGCTAACTGATTTTGGACTGTCAAAAGAGATTAATGAATTGGGGAGATCCAACTCTTTTTGTGGGACTGTAGAATACATGGCTCCAGAAATCCTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttttcattttgaatatgcatgttccattgctgaactcagtgcttgtcatacagGTTATGCTAACTGATTTTGGACTGGCAAAAGAAATTGATGAGTCAAGCAGATCTAATTCAATGTGTGGAACCACAGAATACATGGCTCCAGAAATCTTAC
       attttgaatat  TA-rich tract