Sequence
atgc intronic sequence ATGC exonic sequence...ttgtagatactgtacatatctatcctgatgattcaagtaatggtgcattttgatgaaatcttttttgcacttttttttctcgttctcttcttatatctagAAATTCATGGGAAGCTCCCAGAATGGATTGAGATCCCTGGAGACACGTGTTCATGGCCTAGAGCTCGCATTGGACGAGATCTCATTTGACTTGGCTGTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g07470.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G10200.1 (Glycine max), 3'ss of exon 7
ttgtagatactgtacatatctatcctgatgattcaagtaatggt-gcattttgatgaaatcttttttg-cacttttttttctcgttctcttcttatatc----tagAAATTCATGGGAAGCTCCCAGAATGGATTGAGATCCCTGGAGACACGTGTTCATGGCCTAGAGCTCGCATTGGACGAGATCTCATTTGACTTGGCTGTGT
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---ttcaaact-taatcattt-tcctctctttttatgtcaaagtagcatttgtgccaattctttaatgacaaacatctccaacatgcttctcc-atattatgacagAAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAGAGACTCGTGTGCATGGCCTTGAGTTGGCATTGGATGAGATCTCTTATGATTTGGCTATAT
upper sequence: Vv17s0000g07470.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G01680.4 (Glycine max), 3'ss of exon 3
-----------------------------------------------------------------------------ttgtagatactgt--acatatcta---tcctgatgattcaagt-aatggtgcattttgatgaaatcttttttg-cacttttttttctcgttctct-tcttatatctagAAATTCATGGGAAGCTCCCAGAATGGATTGAGATCCCTGGAGACACGTGTTCATGGCCTAGAGCTCGCATTGGACGAGATCTCATTTGACTTGGCTGTGT
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gtttgttagtaataaattccctcaatcaaattattttatctctgctgcttaattctgcaaattactggagcgaaggctagttaatactgtcatcgtgttcaattttctctctttttatgtcaatgtagcatttgtgccaattctttaatgacaatcatctccaacatgctccatattgtgac-agAAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAGAGACTCGTGTGCATGGCCTTGAGTTGGCATTGGATGAGATCTCTTATGATTTGGCTATATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110379772|gb|EC944991.1|EC944991EST: GCTAAATCTCCTCCAG AAATTCATGGGAAGCTCCCAGAATGGATTGAGATCTCTGGAGACACGTGTT
genomic: GCTAAATCTCCTCGAGgtatgctcac ... ttatatctagAAATTCATGGGAAGCTCCCAGAATGGATTGAGATCCCTGGAGACACGTGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattttgatgaaatcttttttgcacttttttttctcgttctcttcttatatctagAAATTCATGGGAAGCTCCCAGAATGGATTGAGATCCCTGGAGACACGTGTTCATGGCCTAGAGCTCGCATTGGACGAGATCTCATTTGACTTGGCTGTGT
ttttgat putative branch site (score: 4)
tcttttttgcactttt putative PPT
atgaaatctttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgtagatactgtacatatctatcctgatgattcaagtaatggtgcattttgatgaaatcttttttgcacttttttttctcgttctcttcttatatctagAAATTCATGGGAAGCTCCCAGAATGGATTGAGATCCCTGGAGACACGTGTTCATGGCCTAGAGCTCGCATTGGACGAGATCTCATTTGACTTGGCTGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - -cctgatg
- - - - - - - - - - - - - - - - tcaagta
- - - - - - - - - - - - - - - - - - - - - gtgcatt