Sequence
atgc intronic sequence ATGC exonic sequencegtagtacttaaaaaaaattaatgtcgtgtgattcatattgagctttatggatttccaactttcattttttttgttcacttttttttgggttgtccttttgtagGCTGTGAGTCAAACAATCAGAGCTAATCAACTTCTTAACCGAAAGCGGGAGAAGGTGAATCGAAAGTATACACAAACAGTGGACAGGGGGCGCCAACTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g07000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G32540.1 (Glycine max), 3'ss of exon 7
gtagtacttaaaaaaaattaatgtcgtgtgattcatattgagctttatggatttccaactttcattttttttgttcacttttttttgggttgtccttttgtagGCTGTGAGTCAAACAATCAGAGCTAATCAACTTCTTAACCGAAAGCGGGAGAAGGTGAATCGAAAGTATACACAAACAGTGGACAGGGGGCGCCAACTGT
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-------------------------gtattatcaataattcaagttatatgcttgtattgtctcttgggtaccattatttaatttctctatatt-tttaatagGCTGAAAGTCAAAATATCCGTGCTAATGTGCTTCTTAACCGAAAGCGTGAGAAGGTGAATCGGAAGTATACTCCAGCTGTGGAGAGGAGGCGTCAACTTT
upper sequence: Vv17s0000g07000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G21900.2 (Glycine max), 3'ss of exon 7
gtagtacttaaaaaaaattaatgtcgtgtgattcatattgagctttatggatttccaactttcattttttttgttcacttttttttgggttgtccttttg-tagGCTGTGAGTCAAACAATCAGAGCTAATCAACTTCTTAACCGAAAGCGGGAGAAGGTGAATCGAAAGTATACACAAACAGTGGACAGGGGGCGCCAACTGT
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-------------------------gtataatcaataattcaagttacatgctcttattgtgtgtctggggtaccattatctaatctctctgtatttttaacagGCTGAAAGCCAAAATATCCGCGCAAATGTGCTTCTTAACCGAAAGCGTGAGAAGGTGAATCGGAAGTATACTCCAGCTGTGGAGAGGAGGCGTCAACTTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggatttccaactttcattttttttgttcacttttttttgggttgtccttttgtagGCTGTGAGTCAAACAATCAGAGCTAATCAACTTCTTAACCGAAAGCGGGAGAAGGTGAATCGAAAGTATACACAAACAGTGGACAGGGGGCGCCAACTGT
ttgtcctttt CT-rich tract
tttcattttttttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagtacttaaaaaaaattaatgtcgtgtgattcatattgagctttatggatttccaactttcattttttttgttcacttttttttgggttgtccttttgtagGCTGTGAGTCAAACAATCAGAGCTAATCAACTTCTTAACCGAAAGCGGGAGAAGGTGAATCGAAAGTATACACAAACAGTGGACAGGGGGCGCCAACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA