Sequence
atgc intronic sequence ATGC exonic sequencegtaggtcaatttttttgtcttgtggaatgaccttttctgaagctgtaggagttgaatgcatactcatatctgtttcagGTACTTTTTTCGGATGCCAATGCCATTGGGTCTATTTGCACCACAGAAATAGCTGGTGAAGATGTGAATGAGAATGAAAGCGCTTCGCCTGAGGAGTTTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g06640.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G32990.1 (Glycine max), 3'ss of exon 2
gtaggtcaatttttttgtcttgtggaatgaccttttctgaagctgtaggagttgaatgcatactcatatctgtttcagGTACTTTTTTCGGATGCCAATGCCATTGGGTCTATTTGCACCACAGAAATAGCTGGTGAAGATGTGAATGAGAATGAAAGCGCTTCGCCTGAGGAGTTTT
||| || | | ||||| | ||| | | || |||||||| ||||||||||| |||| |||||||||| |||||| ||||||| |||||| |||| || ||| | |||||| | | ||| ||||| ||||| | ||| | ||||| |||||||
gtaagttattgttttt--catgtcaca-gttattatctgaagcaataggagttgaacacataatcatatctgtatcagGTGCTTTTTTTGGATGCTGATGCTGTTATACCTAATCTAACCACATTCAATGTGAGTGGAGATGCAAATGACACAGAATGTGCTTCACCTGAGGCTGAGG
upper sequence: Vv17s0000g06640.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G00820.1 (Glycine max), 3'ss of exon 2
gtaggtcaatttttttgtcttgtggaatgaccttttctgaagctgtaggagttgaatgcatactcatatctgtttcagGTACTTTTTTCGGATGCCAATGCCATTGGGTCTATTTGCACCACAGAAATAGCTGGTGAAGATGTGAATGAGAATGAAAGCGCTTCGCCTGAGGAGTTTT
||| || | | || || | || || | | ||||| | ||| |||||||||||| |||||| ||||||||| |||||| ||||||| ||| || |||| || || | ||||||| | | ||||||||| ||||||| ||| || || | | || ||
gtaagttattgttattcttctgcaaaa-gccattttcaggagcagtaggagttgaacgcatacccatatctgtatcagGTGCTTTTTTTGGACGCTGATGCTGTTATACCTGATCTAACCACAGTCACGGTGAGTGAAGATGCAAATGAGACTGAGAGTGCCGAGACAGAAAGTGCTT
upper sequence: Vv17s0000g06640.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G07740.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaggtcaatttttttgtcttgtggaatgaccttttc--tgaagctgtaggagttgaatgcatactcatatctgtttcagGTACTTTTTTCGGATGCCAATGCCATTGGGTCTATTTGCACCACAGAAATAGCTGGTGAAGATGTGAATGAGAATGAAAGCGCTTCGCCTGAGGAGTTTT
||||| | || | | || | || | | | | | ||| | |||||||||||||||||| ||| |||||||||||| || | || ||||| | | | || | || || | | || |||| ||| || ||| | |||| ||||| || ||||
gtaggccg-ttgtgaaattttctctgatcatatgctgaataaggcttttaagtttgaatgcatactcatatatgtatcagGTACTTTTCTCTGGCGCTGATGCCGTGGTGCCTCCTATTACAACGTCTACATTATCAGATGATGAGAACGATTTTGATATGACTTCACCTGAAGAATTTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggaatgaccttttctgaagctgtaggagttgaatgcatactcatatctgtttcagGTACTTTTTTCGGATGCCAATGCCATTGGGTCTATTTGCACCACAGAAATAGCTGGTGAAGATGTGAATGAGAATGAAAGCGCTTCGCCTGAGGAGTTTT
tctgtttc CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggtcaatttttttgtcttgtggaatgaccttttctgaagctgtaggagttgaatgcatactcatatctgtttcagGTACTTTTTTCGGATGCCAATGCCATTGGGTCTATTTGCACCACAGAAATAGCTGGTGAAGATGTGAATGAGAATGAAAGCGCTTCGCCTGAGGAGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG