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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgattgttcgaatctgcctatttaataaaaatttcagcattcatgcacttttatggaattattctcatgttatggaattattctcatgtttgctatttttgtgttttacttcatagGCAATGACAATGATGGGTCTTTATGATTCTGCCTACTGGTTGTCATGGCTCACATGGGAGGGAATTATCATACTTATTGCTTCACTTTTCATTGTTCTCT

Basic information

species Vitis vinifera
transcript Vv17s0000g05850.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g05850.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G61730.1 (Arabidopsis thaliana), 3'ss of exon 3
gtattgattgttcgaatctgcctatttaataaaaatttcagcattcatgcacttttatggaattattctcatgttatggaattattctcatgtttgctatttttgtgttttacttcatagGCAATGACAATGATGGGTCTTTATGATTCTGCCTACTGGTTGTCATGGCTCACATGGGAGGGAATTATCATACTTATTGCTTCACTTTTCATTGTTCTCT
                        ||| |||| ||| || |  ||| ||   |||  | |  | |   |     ||| | || ||| |  |||||      |||||    | ||  | |||||||||||| ||||||| ||||||| ||||| || |||||||||||||||| |||||| |||||  | |   || |  | ||||| ||| | || ||||
-----------------------gttttataataatctctg--ttcttgttttttggtagcctgaggttttgcgtattggatcattgttttgttt-----ctttgt----tgctcaacagGCAATGACAACGATGGGTGTTTATGAATCTGCATATTGGTTGTCATGGCTCATATGGGAAGGAATCCTTACCTTTGTCTCCTCACTCTTCTTGGTCCTCT

upper sequence: Vv17s0000g05850.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G47730.1 (Arabidopsis thaliana), 3'ss of exon 3
gtattgattgttcgaatctgcctatttaataaaaatttcagcattcatgcacttttatggaattattctcatgttatggaattattctcatgtttgctatttttgtgttttacttcatagGCAATGACAATGATGGGTCTTTATGATTCTGCCTACTGGTTGTCATGGCTCACATGGGAGGGAATTATCATACTTATTGCTTCACTTTTCATTGTTCTCT
                                        | ||        || |||     ||  ||  ||| |   ||   |  | ||  | | | |  ||||||| | |   | |||||||||| ||||||||| ||| |||  |||| || |||||||||||||| || ||||| |||||| | |     ||  |  | ||  | |  ||||| |
----------------------------------------gtataacgttgtttctata----taggctgctgtgaacaaa--gtctttatagtagat-tgattgtgttgtgca--acagGCAATGACGATGATGGGTGTTTTTGACACTGCTTATTGGTTGTCATGGCTTACTTGGGAAGGAATTCTTACTGCCATCTCGGCGCTCCTGACGGTTCTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctcatgttatggaattattctcatgtttgctatttttgtgttttacttcatagGCAATGACAATGATGGGTCTTTATGATTCTGCCTACTGGTTGTCATGGCTCACATGGGAGGGAATTATCATACTTATTGCTTCACTTTTCATTGTTCTCT
                                          ttttacttc  CT-rich tract
                                tatttttgtgtttta  TA-rich tract