Sequence
atgc intronic sequence ATGC exonic sequence...tgaaaaaaagaccattgaatttgcttaaaattttttgttgaccaaattggatgaattgcagattctaacatggatttttgttcttttgatacaatcacagAGTCCTGAGAGAGATTTTACAATAAAGATTTCTGGACTAGAAATTTATAACGAGAATGTCAAGGACCTATTGAATTCTGAATCAGGTCGCAACCTTAAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g03290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G31270.1 (Glycine max), 3'ss of exon 3
-------------------------------------------------------------------------------tgaaaaaaagaccattgaatttgcttaaaattt-------tttgttgaccaaattggatgaa----ttgcagattctaa--catggatttttgttcttttg--atacaatcacagAGTCCTGAGAGAGATTTTACAATAAAGATTTCTGGACTAGAAATTTATAACGAGAATGTCAAGGACCTATTGAATTCTGAATCAGGTCGCAACCTTAAGC
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gtaagttttcccaaagctacattgtaggctatatttgtagaattggattttctttatcggttgtataattggattcttatgatgaagacactattctgtctaattttaattctaatacatgtaatgaaaacactcgataggatttttgaggttgttaaattgtggctaacctttcatttggcatatcattacagACCCCTGAAAGAGATTTCACTATAAAAATATCTGGACTAGAAATATACAATGAGAATGTAAGGGACTTGTTAAATTCAGAATCTGGTCGCAGTTTGAAAC
upper sequence: Vv17s0000g03290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G10790.1 (Glycine max), 3'ss of exon 3
-----------------------------------------------------------------------tgaaaaaaagaccat---tgaatttgcttaaaattttttgttgaccaaattggatgaa---ttgcagattctaacatggatttttgttcttttgatacaatcacagAGTCCTGAGAGAGATTTTACAATAAAGATTTCTGGACTAGAAATTTATAACGAGAATGTCAAGGACCTATTGAATTCTGAATCAGGTCGCAACCTTAAGC
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gtaagtttttccaaagctacattgtaagttatattctttatcagttgtaaaattggattcttattgctagatgaagacaatattttgtctaattttaattctaatatatgtatgaaaaaattagataggattttggaggttgttaaattg-tgactaatctctcaatt--attacagAGCCCTGAAAGGGATTTCACTATAAAAATATCTGGACTAGAGATATACAACGAGAATGTAAGGGACTTGTTAAATTCAGAATCTGGTCGCAGTTTGAAGC
upper sequence: Vv17s0000g03290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G18370.1 (Arabidopsis thaliana), 3'ss of exon 4
tgaaaaaaagaccattgaatttgcttaaaattttttgttgaccaaattggatgaattgcagattctaacatggatttttgttcttttgat--acaatcacagAGTCCTGAGAGAGATTTTACAATAAAGATTTCTGGACTAGAAATTTATAACGAGAATGTCAAGGACCTATTGAATTCTGAATCAGGTCGCAACCTTAAGC
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-------gtaagcactgc-tttggtcagagtcaatgttttag-acgtcaaatgcagttc---ttctgaccaatacctttatttgtttcactgttgtttccagACCCCTGAAAGAGATTTTACTATCAAGATTTCTGGTCTGGAAATATATAATGAAAATGTCAGAGATCTGCTCAATTCAGATTCGGGACGTGCCCTTAAACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110687709|gb|EE065429.1|EE065429EST: ATATCTATAAGCATATAATAAAT AGTCCTGAGAGAGATTTTACAATAAAGATTTCTGGACTAGAAATTTATAAC
genomic: ATATCTATAAGCATATAATAAATgtaagcttta ... acaatcacagAGTCCTGAGAGAGATTTTACAATAAAGATTTCTGGACTAGAAATTTATAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attggatgaattgcagattctaacatggatttttgttcttttgatacaatcacagAGTCCTGAGAGAGATTTTACAATAAAGATTTCTGGACTAGAAATTTATAACGAGAATGTCAAGGACCTATTGAATTCTGAATCAGGTCGCAACCTTAAGC
atttttgttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgaaaaaaagaccattgaatttgcttaaaattttttgttgaccaaattggatgaattgcagattctaacatggatttttgttcttttgatacaatcacagAGTCCTGAGAGAGATTTTACAATAAAGATTTCTGGACTAGAAATTTATAACGAGAATGTCAAGGACCTATTGAATTCTGAATCAGGTCGCAACCTTAAGC
- aaaaaaa
- - - - - -ccattga
- - - - - - - - - - - -cttaaaa
- - - - - - - - - - - - - - - - - - - -gaccaaa
- - - - - - - - - - - - - - - - - - - - - - - -tggatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgga