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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttggttttcttttcataatttgtttatttagagctgtatgcttgtctaattggttaaccccatgtattacagattttaaatattatccgatctcagtattgacattgatcatatctttttttcttgcaatattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTAGGGAAAACTGTTCTTATTATGGAACTTATTAACA

Basic information

species Vitis vinifera
transcript Vv17s0000g02900.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os01g49190.1 (Oryza sativa), 3'ss of exon 3
gtttgttggttt---tcttttcataatttgtttatttagagctgtatgcttgtctaattggttaaccccatgtattacagattttaaatattatccgatctcagtattgacattgatcatatctttttttc---ttgcaatattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTAGGGAAAACTGTTCTTATTATGGAACTTATTAACA
||    |  |||   ||| |||  || |  |||  ||| | |  | ||  | | ||| |  ||  ||   |   |||    | |||| | | |   |   |   | ||   |   ||  | ||||         |||||  ||||  ||||| || ||||| |||||||| |||||||||||||| || ||||| ||||| ||||||||||| || || |||||||| |||||||||||  | || ||||
gtacactaatttctgtctcttctgaaatgattttcttaaaccc-tgtgtctttttaaat--tt--cctagttggttaggtttcttaattgtcaagaggcgttcctttttgtacc-attttgtcttacacaaggattgca-catttatcagGTCGTGGATCTCCTTGCACCCTATCAAAGAGGTGGTAAAATTGGTCTCTTCGGTGGTGCTGGGGTGGGCAAAACTGTACTTATTATGGAGTTGATCAACA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os05g47980.1 (Oryza sativa), 3'ss of exon 3
gtttgttggttttcttttcataatttgtttatttagagctgtatgcttgtctaattggttaaccccatgtattacagattttaaatattatccgatctcagtattgacattga-tcatatctttttttctt--gcaatattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTAGGGAAAACTGTTCTTATTATGGAACTTATTAACA
                          || || ||   |    |  ||| ||| ||    |       || | ||     ||| |||  ||     |  ||    |||  | || || ||  |  | | | |  |    |||||  ||||||| ||||| ||||| || || ||||||||||||||||| || || ||||||||||| || || || |||||||| |||||||||||  | || ||||
--------------------------gtataatt---gtcccacccttctctgatcctgtggttatctgaagta-----tttgaatggtaaatagttgcaaccatgatttagagtcctaattgctgtacattggtttaattttatagGTTGTGGATCTGCTTGCGCCCTACCAAAGAGGTGGAAAGATCGGTCTTTTTGGTGGTGCAGGAGTCGGCAAAACTGTCCTTATTATGGAGTTGATCAACA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G041275_T01 (Zea mays), 3'ss of exon 3
gtttgttggttttcttttcataatttgtttatttagagctgtatgcttgtctaattggttaaccccatgtattacagattttaaatattatccgatctcagtattgacattgatcatatctttttttcttgcaatattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTAGGGAAAACTGTTCTTATTATGGAACTTATTAACA
                       |     | ||| ||  ||| ||  |||||| || | ||    | | |    ||  ||| |    ||||  |  |  ||| || |||     ||    || |  |  |           ||||| || |||||||||||||| || ||||||||||| || ||||| |||||||||||||| || || || |||||||| ||||| ||||| || |||||||
----------------------gtgcacctctttggaagtgtgtgactgtctagtttgctaggttctttt----catctttcagtggttatt-gtgcatagttttaaca-----caaggattctacttctat---------cagGTCGTGGATCTTCTTGCACCTTACCAAAGAGGTGGTAAAATTGGTCTCTTTGGTGGTGCAGGGGTGGGAAAAACTGTCCTTATCATGGAGCTGATTAACA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G021331_T01 (Zea mays), 3'ss of exon 3
gtttgttggttttcttttcataatttgtttatttagagctgtatgcttgtctaattggttaac-cccatgtattacagattttaaatattatccgatctcagtattgacattgatcatatctttttttcttgcaatattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTAGGGAAAACTGTTCTTATTATGGAACTTATTAACA
                                   || |   |  |   |||||||   || | || |||  | |||    || |||  |    |||   | | |||      || || | | |||  | ||||          ||| || |||||||||||||| || |||||||||||||| ||||| ||||| |||||||| || || || |||||||| || |||||||| || || ||||
--------------------------aggaggcaggaaccaaacaccc-tctaatttagtagcacctatgc-tgacattgcttgaatgat----gattata-tgttgtagc--ataatgtttctttgacatgca----------gGTCGTGGATCTTCTTGCACCCTACCAAAGAGGTGGAAAAATTGGTCTCTTCGGTGGTGCAGGAGTGGGTAAAACTGTGCTCATTATGGAGCTGATCAACA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G113408_T02 (Zea mays), 3'ss of exon 3
gtttgttggttttcttttcataatttgtttatttagagctgtatgcttgtctaattggttaac-cccatgtattacagattttaaatattatccgatctcagtattgacattgatcatatctttttttcttgcaatattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTAGGGAAAACTGTTCTTATTATGGAACTTATTAACA
||    | |||   ||||| |  |    ||| || |||        |  |||||||   || | || |||   |             |||  | ||     |  |  ||||| ||  |||  | |||  |||  |||     ||||| || |||||||||||||| || ||||| |||||||||||||| ||||| |||||||| || || || |||||||| || ||||||||  | || ||||
gtagtcttgttcatttttcgtgctagaattactttgag--------tcctctaatttagtagcacctatgcggt------------cattgcctgaatggtgattatacatt-atagtataatgtttctttgacata-----cagGTCGTGGATCTTCTTGCACCCTACCAAAGGGGTGGAAAGATTGGTCTCTTCGGTGGTGCAGGAGTGGGTAAAACTGTGCTCATTATGGAGTTGATCAACA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G41330.1 (Glycine max), 3'ss of exon 3
gtttgttggttttcttttcataatttgtttatttagagctgtatgcttgtctaattggttaaccccatgtattacagattttaaatattatccgatctcagtattgacattgatcatatctttttttcttgcaatattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTAGGGAAAACTGTTCTTATTATGGAACTTATTAACA
    ||   ||| ||||| ||  |||  || | || |  || ||  || |||  |    |      |  || |   |    |   | ||||     ||   || |||  ||      ||   |||||  || |        |||||||| || || |||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||
----gtatttttcctttttatgtttttcttttgtaaa--tgcat-tttatctggtctccttcattaagttacttgtgcaggtgtgtcttat---gactggttactgatttt---tgcatgaattttttgtgta--------cagGTTGTTGACCTGCTTGCACCATATCAAAGAGGAGGAAAGATTGGGTTGTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAACTTATTAACA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G25920.1 (Glycine max), 3'ss of exon 3
gtttgttggttttcttttcataatttgtttatttagagctgtatgcttgtctaattggttaaccccatgtattacagattttaaatattatccgatctcagtattgacattgatcatatctttttttcttgcaatattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTAGGGAAAACTGTTCTTATTATGGAACTTATTAACA
    ||   ||| ||||| ||  ||  ||| |||     |  |||| | | ||  || |   |  ||| | | |  | |  |   | | ||  |   |  |  | |  | |||| |      |||||  || |        |||||||| || || |||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||
----gtatttttcctttttatgtttcttttttttgtttgtaaatgcat-tttatctgatctccttcat-tgtca-ggttacttgttctcatgtgtcatatgattcgttactgattaa-----ttttttgtgta--------cagGTTGTTGACCTGCTTGCACCATATCAAAGAGGAGGAAAGATTGGGTTGTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAACTTATTAACA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G08670.1 (Arabidopsis thaliana), 3'ss of exon 3
gtttgttggttttcttttcataatttgtttatttagagctgtatgct-tgtctaattggttaaccccatgtattacagattttaaatattatccgatctcagtattgacattgatcatatctttttttcttgcaatattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTAGGGAAAACTGTTCTTATTATGGAACTTATTAACA
                                        |||   | ||  |  | | |   | |  | |   |||| |   |  | || ||     |  || ||      || |  || |||  || || |     ||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| || || ||||
----------------------------------------gtagattctgggtcctagctctgcactgt-tcccacaggtcacatgtgttgtct----ttcgtgtt----ccgagctgatatttagtttttcc-----ttttcagGTTGTTGATCTTCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGTCTCTTTGGCGGTGCTGGTGTTGGGAAAACTGTGCTTATTATGGAGCTGATCAACA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G08690.1 (Arabidopsis thaliana), 3'ss of exon 3
gtttgttggttttcttttcataatttgtttatttagagctgtatgcttgtctaattggttaaccccatgtattacagattttaaatattatccgatctca---gtattgacattgatcatatctttttttcttgcaatattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTAGGGAAAACTGTTCTTATTATGGAACTTATTAACA
                                                         ||  |  |   ||  ||  | | |  | | ||  |  |  |||   || |||    | ||       |  ||  | |   || ||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| || || ||||
---------------------------------------------------------gtagattctgagtccta--gctctgcactgttcccacaggtcacatgtgttgtttcttatttcgaggtgattcttcgttttacttttcagGTTGTTGATCTTCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGTCTCTTTGGCGGTGCTGGTGTTGGGAAAACTGTGCTTATTATGGAGCTGATCAACA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G08680.1 (Arabidopsis thaliana), 3'ss of exon 3
gtttgttggttttcttttcataatttgtttatttagagctgtatgcttgtctaattggttaaccccatgtattacagattttaaatattatccgatctca-gtattgacattgatcatatctttttttcttgcaatattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTAGGGAAAACTGTTCTTATTATGGAACTTATTAACA
                                                      | | | |   | |  ||   | |   ||   |||   | | || || || ||| | ||   ||| |  |    ||||    | |||   ||||||| ||||| ||||| || || |||||||| |||||||||||||| ||||| ||||||||||| |||||||| || || ||||||||||| |||||||
-----------------------------------------------------gtagatca--tctacctacctctgcgctt---tatccacaggtcacatgtgttgtcttt---catgttctgagctctt----tttttattagGTTGTTGATCTCCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGGCTTTTTGGCGGTGCTGGTGTTGGGAAAACAGTGCTCATTATGGAACTGATTAACA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ31624 (Selaginella moellendorffii), 3'ss of exon 3
gtttgttggttttcttttcataatttgtttatttagagctgtatgcttgtctaattggttaaccccatgtattacagattttaaatattatccgatctcagtattgacattgatcatatctttttttcttgcaatattttc---cagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTAGGGAAAACTGTTCTTATTATGGAACTTATTAACA
                                                                                          | ||||   | | |  |||||  ||    ||  ||  |  || ||  ||||   ||||| || ||||||||||||||||| ||| ||||||| || || || || || || ||||||||||| ||||| || || || |||||||| ||||||||||
-----------------------------------------------------------------------------------------gtacgatgcaaatgt--acatttttctatactggttaacaagccattctttcatccagGTGGTGGATCTTCTTGCACCATACCAACGAGGTGGGAAAATCGGACTTTTCGGGGGTGCTGGTGTCGGGAAGACAGTGCTGATTATGGAGCTTATTAACA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ38525 (Selaginella moellendorffii), 3'ss of exon 3
gtttgttggttttcttttcataatttgtttatttagagctgtatgcttgtctaattggttaaccccatgtattacagattttaaatattatccgatctcagtattgacattgatcatatctttttttcttgcaatattttc---cagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTAGGGAAAACTGTTCTTATTATGGAACTTATTAACA
                                                                                          | ||||   | | |  |||||  ||    ||  ||  |  || ||  ||||   ||||| || ||||||||||||||||| ||| ||||||| || || || || ||||| ||||||||||| ||||| || || || |||||||| ||||||||||
-----------------------------------------------------------------------------------------gtacgatgcaaatgt--acatttttctatactggttgacaagccattctttcatccagGTGGTGGATCTTCTTGCACCATACCAACGAGGTGGGAAAATCGGACTTTTTGGGGGTGCTGGTGTCGGGAAGACAGTGCTGATTATGGAGCTTATTAACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351023372|gb|FQ432755.1|FQ432755
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGNGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|110732337|gb|EE107534.1|EE107534
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCAC-ATACCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|110724937|gb|EE101202.1|EE101202
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|351022146|gb|FQ438731.1|FQ438731
EST:     CCTTTGTTGATCAGGCTACTGAACAACAAATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGAATGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|110688264|gb|EE066616.1|EE066616
EST:     CAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|161707022|gb|FC055130.1|FC055130
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|351019677|gb|FQ439494.1|FQ439494
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGNGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|110688946|gb|EE068082.1|EE068082
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|110389138|gb|EC953954.1|EC953954
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|110359453|gb|EC920958.1|EC920958
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|351015254|gb|FQ445538.1|FQ445538
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAA
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAA
EST: gi|110702280|gb|EE080812.1|EE080812
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|351047137|gb|FQ454747.1|FQ454747
EST:     CCTTTGTTGATCANGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGGAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|351025232|gb|FQ433649.1|FQ433649
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|161721398|gb|FC071064.1|FC071064
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         TTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|161718420|gb|FC064789.1|FC064789
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|351027762|gb|FQ446929.1|FQ446929
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTGAGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|349823703|gb|FQ415113.1|FQ415113
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATATCATAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|351028401|gb|FQ427297.1|FQ427297
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|351026662|gb|FQ436315.1|FQ436315
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|161710369|gb|FC061091.1|FC061091
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTTGGGCTCTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGA-TTGGGCTCTT
EST: gi|349826477|gb|FQ418568.1|FQ418568
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|352789612|gb|FQ476210.1|FQ476210
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|110726783|gb|EE102867.1|EE102867
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GGTGGCGATCTTCCTGCGCCATATCAAAAAGGTGGAAAGATTGGGCTCCTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|349823820|gb|FQ415231.1|FQ415231
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|351030186|gb|FQ432124.1|FQ432124
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|161719858|gb|FC069012.1|FC069012
EST:     CCTTTGTTGACCAGGCCACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|161715733|gb|FC066137.1|FC066137
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAA                         GTTGTCGATCTTCTTGCAC
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCAC
EST: gi|351022190|gb|FQ438775.1|FQ438775
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCAATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|351030612|gb|FQ437038.1|FQ437038
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGGATTAAG                         GTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|110356708|gb|EC919733.1|EC919733
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|352782351|gb|FQ470254.1|FQ470254
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|352787189|gb|FQ477809.1|FQ477809
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|349826538|gb|FQ418629.1|FQ418629
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCAATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|352773165|gb|FQ470780.1|FQ470780
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GCTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|110698394|gb|EE075844.1|EE075844
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|351022974|gb|FQ428883.1|FQ428883
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|351040271|gb|FQ425357.1|FQ425357
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|352795075|gb|FQ477185.1|FQ477185
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|351028760|gb|FQ433190.1|FQ433190
EST:     CCTTTGTTGACCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATACCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|71860596|gb|DT009651.1|DT009651
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT
EST: gi|349823819|gb|FQ415230.1|FQ415230
EST:     CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG                         GTTGTCGATCTTCTTGCACCATATCANAGAGGTGGAAAGATTGGGCTCTTT
genomic: CCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAGgtttgttggt ... tattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccgatctcagtattgacattgatcatatctttttttcttgcaatattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTAGGGAAAACTGTTCTTATTATGGAACTTATTAACA
                                             tattttcc  CT-rich tract
                       atcatatcttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgttggttttcttttcataatttgtttatttagagctgtatgcttgtctaattggttaaccccatgtattacagattttaaatattatccgatctcagtattgacattgatcatatctttttttcttgcaatattttccagGTTGTCGATCTTCTTGCACCATATCAAAGAGGTGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTAGGGAAAACTGTTCTTATTATGGAACTTATTAACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG