1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagttaacttatttttgttagccactctttaagcaggcttagcaatgctttgttgtttatgctataatttcaatatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAGAACAATGTGAGTGCGATGTCAGCATTACAGGAGTTGGAAGACCTGGCGA
species | Vitis vinifera |
transcript | Vv17s0000g02550.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAGEST: gi|33409261|gb|CF214888.1|CF214888
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAGEST: gi|33409505|gb|CF215132.1|CF215132
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAGEST: gi|30304031|gb|CB980825.1|CB980825
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAGEST: gi|110386787|gb|EC951412.1|EC951412
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAGEST: gi|71872985|gb|DT022040.1|DT022040
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAGEST: gi|351052028|gb|FQ455321.1|FQ455321
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAGEST: gi|110361389|gb|EC924857.1|EC924857
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAGEST: gi|351044429|gb|FQ442960.1|FQ442960
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCCGTTCAGCGAGEST: gi|352781293|gb|FQ467374.1|FQ467374
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAGEST: gi|352767930|gb|FQ466139.1|FQ466139
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAGEST: gi|352777515|gb|FQ474512.1|FQ474512
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: TGGCAGAGTGGATGAACTACGAGGTTTTTAAGCAAAAACTGGAGCACATT CAAGGAAAGATCAAACTGTCGGTCGGTGTGCTAAGGACCCAGTTCAGCGAGEST: gi|352777989|gb|FQ467042.1|FQ467042
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAGEST: gi|30304094|gb|CB980888.1|CB980888
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
tttaagcaggcttagcaatgctttgttgtttatgctataatttcaatatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAGAACAATGTGAGTGCGATGTCAGCATTACAGGAGTTGGAAGACCTGGCGA
tttatgctataatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttaacttatttttgttagccactctttaagcaggcttagcaatgctttgttgtttatgctataatttcaatatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAGAACAATGTGAGTGCGATGTCAGCATTACAGGAGTTGGAAGACCTGGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA