Sequence
atgc intronic sequence ATGC exonic sequence...tgaagatatgtgtccctaaatttctctaaatatatgttagcttgaggtgatctgcaattagatgatatgaaacgtaatgttatgccaaatgtctatgcagATTTGTGCAGGTAAAGTTACTACTCTTCACCTTTATCAAGGGGCATTTGTTGACATTGGAGGTGTATATGATGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G36900.1 (Glycine max), 3'ss of exon 3
---tgaagatatgtgtccctaaatttctctaaatatatgttagcttgaggtgatctgcaattagatgatatgaaacgtaatg--ttatgccaaatgtctatgcagATTTGTGCAGGTAAAGTTACTACTCTTCACCTTTATCAAGGGGCATTTGTTGACATTGGAGGTGTATATGATGG
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agttcataataaaagtgtggaaatgg----agattcaagttttttttaagt-acctgaaagagaatttcatatatattaataacttgggacatttttctatgcagATTTGTGTAGGGAAGGTGACAATGTTGCATCTCTATCAAGGGGCATTTGTTGACATTGGCGGTGTACATGATGG
upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G18080.1 (Glycine max), 3'ss of exon 3
tgaagatatgtgtccctaaatttctctaaatatatgtt--agcttgaggtg-atctgcaattagatgatatgaaacgtaat--gttatgccaaatgtctatgcagATTTGTGCAGGTAAAGTTACTACTCTTCACCTTTATCAAGGGGCATTTGTTGACATTGGAGGTGTATATGATGG
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-----ataattcataataaaagtgtggaaatggagattcgagtttttgatgtacctgaaagagaaattcatatatattaattacttgggacatttttctatgcagATTTGTGTAGGGAAGGTGACAATGTTGCATCTCTATCAAGGGGCATTTGTTGACATTGGCGGGGTACATGATGG
upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G48500.2 (Arabidopsis thaliana), 3'ss of exon 3
tgaagatatgtgtccctaaatttctctaaatatatgttagcttgaggtgatctgcaattagatgatatgaaacgtaatgttatgccaaatgtctatgcagATTTGTGCAGGTAAAGTTACTACTCTTCACCTTTATCAAGGGGCATTTGTTGACATTGGAGGTGTATATGATGG
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---------------gtaagaattcttattctaagccttgtatattgtaactaatgattggtttaaatga---gcaatatcgt----aatgtccatgcagGTTTGTGAAGGCACAGTTACCACTTTACATCTGTATCAGGGAGCGTTTGTTGACATTGGAGGTGTTCATGAAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggtgatctgcaattagatgatatgaaacgtaatgttatgccaaatgtctatgcagATTTGTGCAGGTAAAGTTACTACTCTTCACCTTTATCAAGGGGCATTTGTTGACATTGGAGGTGTATATGATGG
taatgttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgaagatatgtgtccctaaatttctctaaatatatgttagcttgaggtgatctgcaattagatgatatgaaacgtaatgttatgccaaatgtctatgcagATTTGTGCAGGTAAAGTTACTACTCTTCACCTTTATCAAGGGGCATTTGTTGACATTGGAGGTGTATATGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - -ccctaaa
- - - - - - - - - - - - - -aaatata
- - - - - - - - - - - - - - - - - - -tagcttg
- - - - - - - - - - - - - - - - - - - - - - - - - -ctgcaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcca