1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtttttgctacttatgggattattgaaattcaaatattttataaagttcaatgtgatgttgtattttcttcaaaattacgctgtgatggcatcacttgtgtctttgtttcaccaaatttatgacaatctgaattttatgaaactacagTGGTGTATCCGGGGAAGGTTGCGGTGTCACTATTGAGGGATTTGCTCCTGTTGATGCAGTTGCAACTCCTCCTGCTGAAGACACTAAG
species | Vitis vinifera |
transcript | Vv17s0000g01540.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGAATGTCTCTAGGTGGTACAACCACATAGAGGCACTTTTGAGGATTTC TGGTGTATCCGGGGAAGGTTGCGGTGTCACTATTGAGGGATTTGCTCCTGTEST: gi|71867690|gb|DT016745.1|DT016745
genomic: GTGAATGTCTCTAGGTGGTACAACCACATAGAGTCACTTTTGAGGATTTCgtaagttttt ... gaaactacagTGGTGTATCCGGGGAAGGTTGCGGTGTCACTATTGAGGGATTTGCTCCTGT
EST: GTGAATGTCTCTAGGTGGTACAACCACATAGAGGCACTTTTGAGGATTTC TGGTGTATCCGGGGAAGGTTGCGGTGTCACTATTGAGGGATTTGCTCCTGTEST: gi|110703308|gb|EE080039.1|EE080039
genomic: GTGAATGTCTCTAGGTGGTACAACCACATAGAGTCACTTTTGAGGATTTCgtaagttttt ... gaaactacagTGGTGTATCCGGGGAAGGTTGCGGTGTCACTATTGAGGGATTTGCTCCTGT
EST: GTGAATGTCTCTAGGTGGTACAACCACATAGAGGCACTTTTGAGGATTTC TGGTGTATCCGGGGAAGGTTGCGGTGTCACTATTGAGGGATTTGCTCCTGTEST: gi|110701720|gb|EE079612.1|EE079612
genomic: GTGAATGTCTCTAGGTGGTACAACCACATAGAGTCACTTTTGAGGATTTCgtaagttttt ... gaaactacagTGGTGTATCCGGGGAAGGTTGCGGTGTCACTATTGAGGGATTTGCTCCTGT
EST: GTGAATGTCTCTAGGTGGTACAACCACATAGAGGCACTTTTGAGGATTTC TGGTGTATCCGGGGAAGGTTGCGGTGTCACTATTGAGGGATTTGCTCCTGTEST: gi|37190706|gb|CF610055.1|CF610055
genomic: GTGAATGTCTCTAGGTGGTACAACCACATAGAGTCACTTTTGAGGATTTCgtaagttttt ... gaaactacagTGGTGTATCCGGGGAAGGTTGCGGTGTCACTATTGAGGGATTTGCTCCTGT
EST: GTGAATGTCTCTAGGTGGTACAACCACATAGAGGCACTTTTGAGGATTTC TGGTGTATCCGGGGAAGGTTGCGGTGTCACTATTGAGGGATTTGCTCCTGC
genomic: GTGAATGTCTCTAGGTGGTACAACCACATAGAGTCACTTTTGAGGATTTCgtaagttttt ... gaaactacagTGGTGTATCCGGGGAAGGTTGCGGTGTCACTATTGAGGGATTTGCTCCTGT
acttgtgtctttgtttcaccaaatttatgacaatctgaattttatgaaactacagTGGTGTATCCGGGGAAGGTTGCGGTGTCACTATTGAGGGATTTGCTCCTGTTGATGCAGTTGCAACTCCTCCTGCTGAAGACACTAAG
aattttatgaaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttttgctacttatgggattattgaaattcaaatattttataaagttcaatgtgatgttgtattttcttcaaaattacgctgtgatggcatcacttgtgtctttgtttcaccaaatttatgacaatctgaattttatgaaactacagTGGTGTATCCGGGGAAGGTTGCGGTGTCACTATTGAGGGATTTGCTCCTGTTGATGCAGTTGCAACTCCTCCTGCTGAAGACACTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA