1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttttatacttctatgagtagttgatctgcatctttgttttccaaattctcgaatagttataaactgtggaaatttgttttggactctgatttctctctagGATGCTCCTGTGCCTCCTTGCATATCACAGTTAGAAGGGGGGCTTGTCCAAGTGGCAATAGAGGTGGAAGACCGTGCACAACGCTCTGCAATTACAA
species | Vitis vinifera |
transcript | Vv17s0000g01530.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTTGTTGATGGTGCGCTTAGTACAGTTGCTGCTGAAACCAACCCACAG GATGCTCCTGTGCCTCCTTGCATATCACAGTTAGAAGGGGGGCTTGTCCAAEST: gi|351029663|gb|FQ427503.1|FQ427503
genomic: ATGTTGTTGATGGTGCGCTTAGTACAGTTGCTGCTGAAACCAACCCACAGgtatattaat ... ttctctctagGATGCTCCTGTGCCTCCTTGCATATCACAGTTAGAAGGGGGGCTTGTCCAA
EST: ATGTTGTTGATGGTGCACTTAGTACAGTTGCTGCTGAAACCAACCCACAG GATGCTCCTGTGCCTCCTTGCATATCACAGTTAGAAGGGGGGCTTGTCCAAEST: gi|349821093|gb|FQ404346.1|FQ404346
genomic: ATGTTGTTGATGGTGCGCTTAGTACAGTTGCTGCTGAAACCAACCCACAGgtatattaat ... ttctctctagGATGCTCCTGTGCCTCCTTGCATATCACAGTTAGAAGGGGGGCTTGTCCAA
EST: ATGTTGTTGATGGTGCGCTTAGTACAGTTGCTGCTGAAACCAACCCACAG GATGCTCCTGTGCCTCCTTGCATATCACAGTTAGAAGGGGGGCTTGTCCAAEST: gi|351027269|gb|FQ444518.1|FQ444518
genomic: ATGTTGTTGATGGTGCGCTTAGTACAGTTGCTGCTGAAACCAACCCACAGgtatattaat ... ttctctctagGATGCTCCTGTGCCTCCTTGCATATCACAGTTAGAAGGGGGGCTTGTCCAA
EST: ATGTTGTTGATGGTGCGCTTAGTACAGTTGCTGCTGAAACCAACCCACAG GATGCTCCTGTGCCTCCTTGCATATCACAGTTAGAAGGGGGGCTTGTCCAAEST: gi|351040562|gb|FQ438106.1|FQ438106
genomic: ATGTTGTTGATGGTGCGCTTAGTACAGTTGCTGCTGAAACCAACCCACAGgtatattaat ... ttctctctagGATGCTCCTGTGCCTCCTTGCATATCACAGTTAGAAGGGGGGCTTGTCCAA
EST: ATGTTGTTGATGGTGCACTTAGTACAGTTGCTGCTGAAACCAACCCACAG GATGCTCCTGTGCCTCCTTGCATATCACAGTTAGAAGGGGGGCTTGTCCAAEST: gi|351027068|gb|FQ439929.1|FQ439929
genomic: ATGTTGTTGATGGTGCGCTTAGTACAGTTGCTGCTGAAACCAACCCACAGgtatattaat ... ttctctctagGATGCTCCTGTGCCTCCTTGCATATCACAGTTAGAAGGGGGGCTTGTCCAA
EST: ATGTTGTTGATGGTGCACTTAGTACAGTTGCTGCTGAAACCAACCCACAG GATGCTCCTGTGCCTCCTTGCATATCACAGTTAGAAGGGGGGCTTGTCCAAEST: gi|351019261|gb|FQ429421.1|FQ429421
genomic: ATGTTGTTGATGGTGCGCTTAGTACAGTTGCTGCTGAAACCAACCCACAGgtatattaat ... ttctctctagGATGCTCCTGTGCCTCCTTGCATATCACAGTTAGAAGGGGGGCTTGTCCAA
EST: ATGTTGTTGATGGTGCGCTTAGTACAGTTGCTGCTGAAACCAACCCACAG GATGCTCCTGTGCCTCCTTGCATATCACAGTTAGAAGGGGGGCTTGTCCAA
genomic: ATGTTGTTGATGGTGCGCTTAGTACAGTTGCTGCTGAAACCAACCCACAGgtatattaat ... ttctctctagGATGCTCCTGTGCCTCCTTGCATATCACAGTTAGAAGGGGGGCTTGTCCAA
ttctcgaatagttataaactgtggaaatttgttttggactctgatttctctctagGATGCTCCTGTGCCTCCTTGCATATCACAGTTAGAAGGGGGGCTTGTCCAAGTGGCAATAGAGGTGGAAGACCGTGCACAACGCTCTGCAATTACAA
ctctgat putative branch site (score: 4)
ctctgatttctctct CT-rich tract
aatagttataaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttatacttctatgagtagttgatctgcatctttgttttccaaattctcgaatagttataaactgtggaaatttgttttggactctgatttctctctagGATGCTCCTGTGCCTCCTTGCATATCACAGTTAGAAGGGGGGCTTGTCCAAGTGGCAATAGAGGTGGAAGACCGTGCACAACGCTCTGCAATTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - ctatgag
- - - - - - - - - - - - -ctgcatc
- - - - - - - - - - - - - - - - - - - - ccaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gactctg