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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcatttctttatctggactatgatgttatcttgttctgtctttgtttgattaccgaaaaaatgcagacgaacaaaaacacttgatgcacaacaagttctggttaagatttttctcgcttcagaattcttggcaaccaaagggatttgctcacttgaaatctgattttttattttcttctgaccaaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG

Basic information

species Vitis vinifera
transcript Vv17s0000g01520.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351030711|gb|FQ438549.1|FQ438549
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351024524|gb|FQ426333.1|FQ426333
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110391853|gb|EC956856.1|EC956856
EST:     GCCATGGTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GCCATGGTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|71879176|gb|DT028231.1|DT028231
EST:     ATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: ATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351031344|gb|FQ445369.1|FQ445369
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|77582780|gb|DV220375.1|DV220375
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351047966|gb|FQ441138.1|FQ441138
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351016634|gb|FQ424061.1|FQ424061
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351039957|gb|FQ464995.1|FQ464995
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|161720709|gb|FC069946.1|FC069946
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|77587950|gb|DV223178.1|DV223178
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351049562|gb|FQ429184.1|FQ429184
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|349824564|gb|FQ413231.1|FQ413231
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|71871988|gb|DT021043.1|DT021043
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110731046|gb|EE108818.1|EE108818
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|349808772|gb|FQ406622.1|FQ406622
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|77582784|gb|DV220376.1|DV220376
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|18458130|gb|BM436408.1|BM436408
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351020386|gb|FQ445993.1|FQ445993
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351054774|gb|FQ462804.1|FQ462804
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351022872|gb|FQ428781.1|FQ428781
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|77588492|gb|DV223460.1|DV223460
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110703455|gb|EE080326.1|EE080326
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351022865|gb|FQ428774.1|FQ428774
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351022452|gb|FQ445227.1|FQ445227
EST:     GTGAAGTATTCGAGAGAACCAGACAGTCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351025356|gb|FQ434369.1|FQ434369
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351036746|gb|FQ457459.1|FQ457459
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110385917|gb|EC950477.1|EC950477
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|77588614|gb|DV223519.1|DV223519
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110710201|gb|EE086327.1|EE086327
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|77584348|gb|DV221246.1|DV221246
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110374920|gb|EC939863.1|EC939863
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110692170|gb|EE071112.1|EE071112
EST:     TTCGAGAGAACCAGACCATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: TTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110702411|gb|EE081095.1|EE081095
EST:     AGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: AGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|352791032|gb|FQ480025.1|FQ480025
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110685102|gb|EE063137.1|EE063137
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351031039|gb|FQ444866.1|FQ444866
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110731731|gb|EE106397.1|EE106397
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351013444|gb|FQ425475.1|FQ425475
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110377700|gb|EC942780.1|EC942780
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351014147|gb|FQ434736.1|FQ434736
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|349822753|gb|FQ398140.1|FQ398140
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|71868858|gb|DT017913.1|DT017913
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351016310|gb|FQ446170.1|FQ446170
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|349830630|gb|FQ416928.1|FQ416928
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|30298202|gb|CB974996.1|CB974996
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110387597|gb|EC952278.1|EC952278
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351021911|gb|FQ437698.1|FQ437698
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|77582608|gb|DV220291.1|DV220291
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351027970|gb|FQ425871.1|FQ425871
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110373579|gb|EC937828.1|EC937828
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|349829646|gb|FQ421164.1|FQ421164
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351013483|gb|FQ425514.1|FQ425514
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|71873861|gb|DT022916.1|DT022916
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351015218|gb|FQ445502.1|FQ445502
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|349812938|gb|FQ411178.1|FQ411178
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351014530|gb|FQ437532.1|FQ437532
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110693521|gb|EE069835.1|EE069835
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|349832827|gb|FQ422949.1|FQ422949
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|71868636|gb|DT017691.1|DT017691
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351038668|gb|FQ464534.1|FQ464534
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGACCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351033545|gb|FQ447704.1|FQ447704
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110708348|gb|EE085789.1|EE085789
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|349832874|gb|FQ422996.1|FQ422996
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|349816010|gb|FQ403577.1|FQ403577
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|349812475|gb|FQ407094.1|FQ407094
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|349828548|gb|FQ417290.1|FQ417290
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110378435|gb|EC943567.1|EC943567
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|37188942|gb|CF608291.1|CF608291
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|71872768|gb|DT021823.1|DT021823
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351023668|gb|FQ448219.1|FQ448219
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110366778|gb|EC930696.1|EC930696
EST:     GCCATGGTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GCCATGGTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|71871695|gb|DT020750.1|DT020750
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351044256|gb|FQ447610.1|FQ447610
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351047426|gb|FQ451938.1|FQ451938
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|349826254|gb|FQ416059.1|FQ416059
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110694166|gb|EE071033.1|EE071033
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTCCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110405724|gb|EC971271.1|EC971271
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351030281|gb|FQ432219.1|FQ432219
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351049089|gb|FQ431633.1|FQ431633
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|51990012|gb|CV179467.1|CV179467
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|349819836|gb|FQ404582.1|FQ404582
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|349829070|gb|FQ419602.1|FQ419602
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|87584599|gb|DY473706.1|DY473706
EST:     AGCCATGGTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: AGCCATGGTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351039332|gb|FQ461199.1|FQ461199
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351025483|gb|FQ435175.1|FQ435175
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351029385|gb|FQ436779.1|FQ436779
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110399508|gb|EC966016.1|EC966016
EST:     AGCCATGGTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: AGCCATGGTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351043007|gb|FQ434448.1|FQ434448
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110377244|gb|EC942306.1|EC942306
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|77579342|gb|DV218499.1|DV218499
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|30124980|gb|CB910319.1|CB910319
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110410598|gb|EC976286.1|EC976286
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110366950|gb|EC930870.1|EC930870
EST:     GCCATGGTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GCCATGGTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|77582985|gb|DV220508.1|DV220508
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|77581217|gb|DV219537.1|DV219537
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|71867984|gb|DT017039.1|DT017039
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|110693946|gb|EE070624.1|EE070624
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCCACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
EST: gi|351040963|gb|FQ443739.1|FQ443739
EST:     GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGT                         CCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
genomic: GTGAAGTATTCGAGAGAACCAGACAATCCTACCAAGTgtacgcattt ... caaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagggatttgctcacttgaaatctgattttttattttcttctgaccaaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG
                                      ttctgac  putative branch site (score: 2)
               ttgaaatctgattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgcatttctttatctggactatgatgttatcttgttctgtctttgtttgattaccgaaaaaatgcagacgaacaaaaacacttgatgcacaacaagttctggttaagatttttctcgcttcagaattcttggcaaccaaagggatttgctcacttgaaatctgattttttattttcttctgaccaaatttcagCCTGCAAAGCCAGGGGTTCCGATCTTAGAGTCCATTTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG