1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gatcatagttactgagcatcattcagattgtaatgtgctttgagtttgatcgccgttatgatagttcttacaccatcattcggattctcttcttggtcagGCATTGGCTATAATGGGTTCCCAAGAGGCTGTTCAGATGACAAGCTCCCTTGGGCAAAG
species | Vitis vinifera |
transcript | Vv17s0000g01370.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTGGTGCATGCTTGGTGAGTCAAAATGGGGTGATTCTTG GCATTGGCTATAATGGGTTCCCAAGAGGCTGTTCAGATGACAAGCTCCCTTEST: gi|351016978|gb|FQ424405.1|FQ424405
genomic: GTTGGTGCATGCTTGGTGAGTCAAAATGGGGTGATTCTTGgtaagatcat ... tcttggtcagGCATTGGCTATAATGGGTTCCCAAGAGGCTGTTCAGATGACAAGCTCCCTT
EST: GTTGGTGCATGCTTGGTGAGTCAAAATGGGGTGATTCTTG GCATTGGCTATAATGGGTTCCCAAGAGGCTGTTCAGATGACAAGCTCCCTTEST: gi|122692257|gb|EC996717.1|EC996717
genomic: GTTGGTGCATGCTTGGTGAGTCAAAATGGGGTGATTCTTGgtaagatcat ... tcttggtcagGCATTGGCTATAATGGGTTCCCAAGAGGCTGTTCAGATGACAAGCTCCCTT
EST: GTTGGTGCATGCTTGGTGAGTCAAAATGGGGTGATTCTTG GCATTGGCTATAATGGGTTCCCAAGAGGCTGTTCAGATGACAAGCTCCCTTEST: gi|352798795|gb|FQ478430.1|FQ478430
genomic: GTTGGTGCATGCTTGGTGAGTCAAAATGGGGTGATTCTTGgtaagatcat ... tcttggtcagGCATTGGCTATAATGGGTTCCCAAGAGGCTGTTCAGATGACAAGCTCCCTT
EST: GTTGGTGCATGCTTGGTGAGTCAAAATGGGGTGATTCTTG GCATTGGCTATAATGGGTTCCCAAGAGGCTGTTCAGATGACAAGCTCCCTT
genomic: GTTGGTGCATGCTTGGTGAGTCAAAATGGGGTGATTCTTGgtaagatcat ... tcttggtcagGCATTGGCTATAATGGGTTCCCAAGAGGCTGTTCAGATGACAAGCTCCCTT
ttgatcgccgttatgatagttcttacaccatcattcggattctcttcttggtcagGCATTGGCTATAATGGGTTCCCAAGAGGCTGTTCAGATGACAAGCTCCCTTGGGCAAAG
ttcttac putative branch site (score: 2)
ttctcttcttggtc putative PPT
ttatgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatcatagttactgagcatcattcagattgtaatgtgctttgagtttgatcgccgttatgatagttcttacaccatcattcggattctcttcttggtcagGCATTGGCTATAATGGGTTCCCAAGAGGCTGTTCAGATGACAAGCTCCCTTGGGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - -cattcag
- - - - - - - - - - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccatc