1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gagttgggtgtctgtctgagctactcaattttctgaaattcattctcggtttatccatttctgtaatttggtttaattttaccatcctttttcttcttagGACATGGTGGAAGCGACGGGCTGCATGCATATGTCCCTTCTCTTGATTATGCTGTTACTGACCTG
species | Vitis vinifera |
transcript | Vv17s0000g01070.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
tcggtttatccatttctgtaatttggtttaattttaccatcctttttcttcttagGACATGGTGGAAGCGACGGGCTGCATGCATATGTCCCTTCTCTTGATTATGCTGTTACTGACCTG
gtttaat putative branch site (score: 4)
tttaattttaccatcc CT-rich tract
taatttggtttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagttgggtgtctgtctgagctactcaattttctgaaattcattctcggtttatccatttctgtaatttggtttaattttaccatcctttttcttcttagGACATGGTGGAAGCGACGGGCTGCATGCATATGTCCCTTCTCTTGATTATGCTGTTACTGACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
gagttgg
- - - - tgtctgt
- - - - - - - - - - - - - - - - - - - - cattctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccatttc