Sequence
atgc intronic sequence ATGC exonic sequencegtaatgcagattaagtgatcatgatttgaggattctgtctctgctactgtgataattattcaatttgaatgttcaattccagGTTCGTGTGGGATGAGGCGAAGTACCCTACAATGTCTCCTCTCAGGGAGATTGTGGATGGCATTCATGTACAAGTAGCTAAGATTGAGGATGATCTTAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g00460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G128995_T01 (Zea mays), 3'ss of exon 3
--gtaatgcagattaagtgatcatgatttgaggattctgtctctgctactgtgataattattcaatttgaatgttcaattccagGTTCGTGTGGGATGAGGCGAAGTACCCTACAATGTCTCCTCTCAGGGAGATTGTGGATGGCATTCATGTACAAGTAGCTAAGATTGAGGATGATCTTAAG
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gtctgctgcaaact--gccaaccccatcggatgggtg---ccctgttcagcttaaaagcttctgtgttgatcgcgcg--cgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGATCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG
upper sequence: Vv17s0000g00460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G144372_T01 (Zea mays), 3'ss of exon 3
gtaatgcagattaagtgat-catgatttgaggattctgtct--ctgctactgtgataattattcaatttgaatgtt-----caattccagGTTCGTGTGGGATGAGGCGAAGTACCCTACAATGTCTCCTCTCAGGGAGATTGTGGATGGCATTCATGTACAAGTAGCTAAGATTGAGGATGATCTTAAG
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gtc-tgctgcctaactgctatctgtccagcccaggctgcccagctgatcggacgcctaaaaccaaccttttgtgttggctccgcgttcagGTTCGTGTGGGATGAGGGCAAATACCCCACAATGTCTCCGCTCAAGGAGATTGTTGGCAGCATCCAGTCACAGGTTGCCAAGATTGAGGATGATATGAAG
upper sequence: Vv17s0000g00460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G177912_T02 (Zea mays), 3'ss of exon 3
-------------------gtaatgcagattaagtgatcatgatttgaggattctgtctctgctactgtgataatt---attcaatttgaatgttcaattccagGTTCGTGTGGGATGAGGCGAAGTACCCTACAATGTCTCCTCTCAGGGAGATTGTGGATGGCATTCATGTACAAGTAGCTAAGATTGAGGATGATCTTAAG
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gtcaggtctgccgctacctgtc-tggtggtttgttacccgcaacatgtgtgtagctcaaaggctagcttgtttgtttgggtcgcgcgtgcctacctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110384883|gb|EC949350.1|EC949350EST: AGTAATGCTTTGACAGTGGATGGGGTTCCTGTTGATTCCTACTTGACGAG GTTCGTGTGGGATGAGGCGAAGTACCCTACAATGTCTCCTCTCAGGGAGAT
genomic: AGTAATGCTTTGACAGTGGATGGGGTTCCTGTTGATTCCTACTTGACGAGgtaatgcaga ... tcaattccagGTTCGTGTGGGATGAGGCGAAGTACCCTACAATGTCTCCTCTCAGGGAGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaggattctgtctctgctactgtgataattattcaatttgaatgttcaattccagGTTCGTGTGGGATGAGGCGAAGTACCCTACAATGTCTCCTCTCAGGGAGATTGTGGATGGCATTCATGTACAAGTAGCTAAGATTGAGGATGATCTTAAG
ataattattcaatttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatgcagattaagtgatcatgatttgaggattctgtctctgctactgtgataattattcaatttgaatgttcaattccagGTTCGTGTGGGATGAGGCGAAGTACCCTACAATGTCTCCTCTCAGGGAGATTGTGGATGGCATTCATGTACAAGTAGCTAAGATTGAGGATGATCTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG