Sequence
atgc intronic sequence ATGC exonic sequence...tacatcctaaactttccaaggaatgacaatggttttacatacactaccagtctagatgaaagtgatgatctcaacatgactgatttctttgtattttcagCAAAGCAAGGAAGGGCAGGACGTCCATCCTGAGCAAATCAAAGCAGTGCTCTTAGATTCAGCAGGTTTCCATGGCATGATGTAGGTTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g00330.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G37750.1 (Glycine max), 3'ss of exon 6
tacatcctaaactttccaaggaatgacaatggttttacatacactaccagtctagatgaaagtgatgatctcaacatga----ctgatttctttgtattttcagCAAAGCAAGGAAGGGCAGGACGTCCATCCTGAGCAAATCAAAGCAGTGCTCTTAGATTCAGCAGGTTTCCATGGCATGATGTAG---GTTT---------
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-gtaattaggaatat---gggagggtgattaatttattaaaaaattatgacttttattaaaatgatgattgtagtataaaaggctaacaatccttctctttcagCAATGCAAAGAAGGTCAGGATGTGCATCCGGAGCAAATCAAAGCAGTACTCTTAGATTCAGCTGGCTACAATGGCATGATGTAACTAGTTTTGAAAAGAA
upper sequence: Vv17s0000g00330.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G17330.1 (Glycine max), 3'ss of exon 5
tacatcctaaactttccaaggaatgacaatggttttacatacactaccagtctagat----gaaagtgatgatctcaacatgactgatttctttgtattttcagCAAAGCAAGGAAGGGCAGGACGTCCATCCTGAGCAAATCAAAGCAGTGCTCTTAGATTCAGCAGGTTTCCATGGCATGATGTAG---GTTT---------
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--tgtcctaaggacacatattagcaagattttttttgtttgtttagtaattaggaatttgggaggatgattaatttatttaaaattattccttctc--tttcagCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTCTTGGATTCAGCTGGCTACAATGGCATGATGTAACTAGTTTTGACAAGAA
upper sequence: Vv17s0000g00330.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G38530.1 (Glycine max), 3'ss of exon 3
tacatcctaaactttccaaggaa-tgacaatggttttacatacactaccagtctagatgaaa--gtgatgatctcaacatgactgatttcttt--gtattttcagCAAAGCAAGGAAGGGCAGGACGTCCATCCTGAGCAAATCAAAGCAGTGCTCTTAGATTCAGC---AGGTTTCCATGGCATGATGTAGGTTT---------
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-----cctggctttatcattaaggttacattttctgttgagatgatacctatgaattaaaaatcatgacaattatgaagtgatgagttttttttcttcttttcagCAACGCAACGAAGGTCAGGATGTCCATCCGGAACAAATCAAAGCGGTTTTGTTGGATTCAGCTGCTGGCTTCCATAGCATGTCCTAATTGCAAAAAACAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.accagtctagatgaaagtgatgatctcaacatgactgatttctttgtattttcagCAAAGCAAGGAAGGGCAGGACGTCCATCCTGAGCAAATCAAAGCAGTGCTCTTAGATTCAGCAGGTTTCCATGGCATGATGTAGGTTT
gactgat putative branch site (score: 3)
tttctttgtattttc CT-rich tract
atttctttgtatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacatcctaaactttccaaggaatgacaatggttttacatacactaccagtctagatgaaagtgatgatctcaacatgactgatttctttgtattttcagCAAAGCAAGGAAGGGCAGGACGTCCATCCTGAGCAAATCAAAGCAGTGCTCTTAGATTCAGCAGGTTTCCATGGCATGATGTAGGTTT
- catccta
- - - - - - - -ccaagga
- - - - - - - - - - - - - - - - - - - - -cactacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgac