Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attattattattatttatagttatgattattgttgttactgcaattactattatgatatatttttttttttgtggcatcttctaactaaattattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACTTGGATTTACCCTTATTCTGGCCATACTGCGAGCTTTCAATGTGAGAGAT

Basic information

species Vitis vinifera
transcript Vv16s0100g00360.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0100g00360.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G32340.1 (Glycine max), 3'ss of exon 2
attattattattatttatagttatgattattgttgttactgcaattactattatgatatattttttt--------ttttgtggcatcttctaac-taaattattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACTTGGATTTACCCTTATTCTGGCCATACTGCGAGCTTTCAATGTGAGAGAT
      ||||   |||||| | | ||  |  |    | | | ||||| ||||   |  | |||||||        |||||     | ||| ||| |  |||| | | |||| ||| || || |||||||| || |||| ||||||||  ||||||||||||||||| ||||| ||||| || |||||||||||||| || ||||| |||
------atta--gtttataatgaagaggagagaatgttccgtaattattatttaaacttctttttttcggttgagttttgacatgtattccaacctttattactgt-agAGCTGTAGAATTAACAGAGAAGCTGGATTTTTCTTCTGCTGTGGCATTACTTGGATTCACCCTCATTCTAGCAATACTGCGAGCTTTTAACGTGAGGGAT

upper sequence: Vv16s0100g00360.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G27200.1 (Glycine max), 3'ss of exon 2
attattattattatttatagttatgattatt--gttgttactgcaattactattatgatatatttttttttttgtggcatcttctaactaaattattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACTTGGATTTACCCTTATTCTGGCCATACTGCGAGCTTTCAATGTGAGAGAT
 ||| | |||| ||  | ||    || | ||  ||  |||    |   | | ||||  | |  ||  ||||||        | | | ||  |||| | | ||||  ||||| || |||||||| || |||| ||||||||  ||||||||||||||||| | ||| ||||| || ||| |||||||||| || ||||| |||
gttagt-ttataatgaagaggagagaatgttcagtaattatattataaagttttattttttggttgattttttacatgtattccaaccttcattactgt-agAGCCGTGGAATTAACAGAGAAGCTGGATTTTTCTTCTGCTGTGGCATTACTTGGATTCAGCCTCATTCTAGCAATATTGCGAGCTTTTAACGTGAGGGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349819429|gb|FQ412323.1|FQ412323
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGGTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351043645|gb|FQ451972.1|FQ451972
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|352798608|gb|FQ480633.1|FQ480633
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTA
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTA
EST: gi|352794419|gb|FQ481650.1|FQ481650
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|349818330|gb|FQ409105.1|FQ409105
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351048854|gb|FQ449722.1|FQ449722
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|349818334|gb|FQ409109.1|FQ409109
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGGATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTA
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTA
EST: gi|349817999|gb|FQ407988.1|FQ407988
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACCGAGAAACTAGATTATTCTTCTGGGGTGGCA
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCA
EST: gi|349823340|gb|FQ402539.1|FQ402539
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|349809592|gb|FQ414482.1|FQ414482
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|352789874|gb|FQ478689.1|FQ478689
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|349818035|gb|FQ408024.1|FQ408024
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCCTCTGGGGTGGGATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|349828273|gb|FQ416226.1|FQ416226
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|349821434|gb|FQ411055.1|FQ411055
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCCCAGTCC                         AGATGTGGATTTGAC
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGAC
EST: gi|349817351|gb|FQ405355.1|FQ405355
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGAATTGACAGAGAAACTAGATTATTCTTCTGGGGTGG
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGG
EST: gi|349818257|gb|FQ409032.1|FQ409032
EST:     TGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTTCACAGTCG                         AAATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351042391|gb|FQ442858.1|FQ442858
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|352786093|gb|FQ481888.1|FQ481888
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|349808974|gb|FQ406824.1|FQ406824
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTT
EST: gi|351036803|gb|FQ457516.1|FQ457516
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGGAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|110361129|gb|EC924582.1|EC924582
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351044833|gb|FQ449087.1|FQ449087
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGGAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351032589|gb|FQ458954.1|FQ458954
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351016613|gb|FQ424040.1|FQ424040
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|349808119|gb|FQ403306.1|FQ403306
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351055026|gb|FQ440365.1|FQ440365
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351037018|gb|FQ460728.1|FQ460728
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351044150|gb|FQ452823.1|FQ452823
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351036292|gb|FQ458667.1|FQ458667
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|349826321|gb|FQ416126.1|FQ416126
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAAAGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAA
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAA
EST: gi|351012102|gb|FQ429908.1|FQ429908
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCCGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351053328|gb|FQ459196.1|FQ459196
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351032587|gb|FQ458952.1|FQ458952
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|349823832|gb|FQ415243.1|FQ415243
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|349811033|gb|FQ406021.1|FQ406021
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351032920|gb|FQ461809.1|FQ461809
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|349812048|gb|FQ410845.1|FQ410845
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCT
EST: gi|349816433|gb|FQ403808.1|FQ403808
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCNTGGGGTGGCATTAC
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTC-TGGGGTGGCATTAC
EST: gi|351052437|gb|FQ452470.1|FQ452470
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351034232|gb|FQ463166.1|FQ463166
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351057404|gb|FQ454086.1|FQ454086
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCTACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTATGGCGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351035263|gb|FQ458620.1|FQ458620
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351032351|gb|FQ461604.1|FQ461604
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351031804|gb|FQ460061.1|FQ460061
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351054983|gb|FQ440322.1|FQ440322
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|352786420|gb|FQ479029.1|FQ479029
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|351041274|gb|FQ447401.1|FQ447401
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAAC
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAAC
EST: gi|351025283|gb|FQ434296.1|FQ434296
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTC-ACAGTCG                         AGATGTGGATTTGACAGAAAAACTAGATT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATT
EST: gi|351055550|gb|FQ442346.1|FQ442346
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
EST: gi|349820599|gb|FQ404094.1|FQ404094
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAAGATTATTCTTCTGGGGTGGCATTAC
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTA-GATTATTCTTCTGGGGTGGCATTAC
EST: gi|349824465|gb|FQ413132.1|FQ413132
EST:     GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGTTGTTTTCCACAGTCG                         AGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT
genomic: GGGATCTTAGCAATGAATGCCTGGTTCTGGAATGCTGTTTTCCACAGTCGgtgagcaatt ... ttattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactattatgatatatttttttttttgtggcatcttctaactaaattattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACTTGGATTTACCCTTATTCTGGCCATACTGCGAGCTTTCAATGTGAGAGAT
                                             ttattttc  CT-rich tract
     ttatgatatatttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
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attattattattatttatagttatgattattgttgttactgcaattactattatgatatatttttttttttgtggcatcttctaactaaattattttcagAGATGTGGATTTGACAGAGAAACTAGATTATTCTTCTGGGGTGGCATTACTTGGATTTACCCTTATTCTGGCCATACTGCGAGCTTTCAATGTGAGAGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - ctgcaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaaa