1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...catttgcattttttttattgtgggtcgtgcagattgaaccccgtataaaagtttgggggaattagaggctgtcttaatgaagcattctttcctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGGAGGAAGGGGCAATGTGTGAGCCATTAAGTGTTGGTGTTCATGCTTGTC
species | Vitis vinifera |
transcript | Vv16s0100g00300.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGEST: gi|110723192|gb|EE100222.1|EE100222
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
EST: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGEST: gi|110720879|gb|EE097185.1|EE097185
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
EST: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGEST: gi|161720719|gb|FC070638.1|FC070638
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
EST: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGEST: gi|110407824|gb|EC973441.1|EC973441
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
EST: AGATGAAATTTTTTGCTACACCTCCAGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATGCTTTAAACTTCCAGACAATGTGAACTTGEST: gi|110718284|gb|EE094941.1|EE094941
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
EST: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAA GTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGEST: gi|110732129|gb|EE107144.1|EE107144
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
EST: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGEST: gi|34548498|gb|CF516730.1|CF516730
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
EST: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGEST: gi|27581705|gb|CB004400.1|CB004400
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
EST: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATGCTTTAAACTTCCAGACAATGTGAGCTTGEST: gi|110408106|gb|EC973729.1|EC973729
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
EST: CTACACCTCCAGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATGCTTTAAACTTCCAGACAATGTGAACTTGEST: gi|110713228|gb|EE088964.1|EE088964
genomic: CTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
EST: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGEST: gi|351022073|gb|FQ437860.1|FQ437860
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
EST: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGEST: gi|110370270|gb|EC929261.1|EC929261
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
EST: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGEST: gi|110361632|gb|EC925120.1|EC925120
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
EST: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGEST: gi|27582562|gb|CB005257.1|CB005257
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
EST: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGEST: gi|26267678|gb|CA818741.1|CA818741
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
EST: GATGAAAATTTTTTGCTACACCCCCTGTTCATGGTTCTCTTGCCAATCAG GTTGTGCCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTEST: gi|71858137|gb|DT007192.1|DT007192
genomic: GATG-AAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTG-CATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTT
EST: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATEST: gi|28962065|gb|CB341098.1|CB341098
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTAT
EST: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGEST: gi|351040180|gb|FQ425266.1|FQ425266
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
EST: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGEST: gi|30304263|gb|CB981057.1|CB981057
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
EST: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAG GTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
genomic: AGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGgttaagaacc ... cctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTG
taaaagtttgggggaattagaggctgtcttaatgaagcattctttcctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGGAGGAAGGGGCAATGTGTGAGCCATTAAGTGTTGGTGTTCATGCTTGTC
tcttaat putative branch site (score: 3)
ttctttcctgtatc putative PPT
ttaatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttgcattttttttattgtgggtcgtgcagattgaaccccgtataaaagtttgggggaattagaggctgtcttaatgaagcattctttcctgtatcagGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGGAGGAAGGGGCAATGTGTGAGCCATTAAGTGTTGGTGTTCATGCTTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
catttgc
- - - - - - - - -ttgtggg
- - - - - - - - - - - - - -tgcagat
- - - - - - - - - - - - - - - - - -gaacccc
- - - - - - - - - - - - - - - - - - - - - - ataaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - ttggggg