Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttttagcctttggttttttcttagatgtatgtggtatgataatgagtttaatcgattatttttgtgtaattggcagTTTGAGAATTCTCGGGATGCGGAAGATGCAATTAGGGGTCGTGATGGCTATAATTTTGATGGTTGTCGTCTGAGG

Basic information

species Vitis vinifera
transcript Vv16s0098g01020.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0098g01020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G40740.3 (Glycine max), 3'ss of exon 3
------gtattttttagcctttggttttttcttaga------tgtatgtggtatgataatg--------agtttaatcgattatt-tttgtgtaattggcagTTTGAGAATTCTCGGGATGCGGAAGATGCAATTAGGGGTCGTGATGGCTATAATTTTGATGGTTGTCGTCTGAGG
       |  ||  |  | || |   || |  | ||      |||||||| | | ||  |         | ||| ||   || || |||||    |||  ||||||| ||| |||| ||||| |||||||||||| ||||||| ||||| || || ||||||||||||||  | || 
gtatttatccttactctctttagtacttcttatggacaattctgtatgtgttgttatcttttcttttgcaatttgataatttgttgtttgttggcttgctagTTTGATAATGCTCGAGATGCCGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGA

upper sequence: Vv16s0098g01020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G14060.3 (Glycine max), 3'ss of exon 3
------gtattttttagcctttggttttttcttaga------tgtatgtggtatgataatg--------agtttaatcgattatt-tttgtgtaattggcagTTTGAGAATTCTCGGGATGCGGAAGATGCAATTAGGGGTCGTGATGGCTATAATTTTGATGGTTGTCGTCTGAGG
       |  ||  |  | || |   || |  | ||      ||||||||   | ||  |         | ||| ||   || || |||||    |||  ||||||| ||| |||| ||||| |||||||||||| ||||||| ||||| || || ||||||||||||||  | || 
gtatttatccttactctctttagtacttcttgtggacaattctgtatgtgtcgttatcttttcttttgcaatttgataatttgttgtttgttggcttgctagTTTGATAATGCTCGAGATGCCGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagatgtatgtggtatgataatgagtttaatcgattatttttgtgtaattggcagTTTGAGAATTCTCGGGATGCGGAAGATGCAATTAGGGGTCGTGATGGCTATAATTTTGATGGTTGTCGTCTGAGG
                        gtttaat  putative branch site (score: 4)
                         tttaatcgattatttt  TA-rich tract