Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctgtctctctctctcatatgtgtccttgcttgtgttgactcgtgttctcacctttttcttaccattattaatcttgatttggtttcagGAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATTAATTCAAAATTTGGGGAGCACATTGAGTACTCTGCTTATGTTGAAGTCT

Basic information

species Vitis vinifera
transcript Vv16s0098g00320.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27586909|gb|CB009604.1|CB009604
EST:     AGTACGAGGAGCTACTCAAAGAGGAACTGCGAATTGAGTTTCGTGGAGAG                         GAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATT
genomic: AGTACGAGGAGCTACTCAAAGAGGAACTGCGAATTGAGTTTCGTGGAGAGgtttctgtct ... ttggtttcagGAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATT
EST: gi|71858262|gb|DT007317.1|DT007317
EST:     AGTATGAGGAGCTACTCAAAGAGGAACTGCGAATTGAGTTTCGTGGAGAG                         GAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATT
genomic: AGTACGAGGAGCTACTCAAAGAGGAACTGCGAATTGAGTTTCGTGGAGAGgtttctgtct ... ttggtttcagGAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATT
EST: gi|351040645|gb|FQ438189.1|FQ438189
EST:     AGTACGAGGAGCTACTCAAAGAGGAACTGCGAATTGAGTTTCGTGGAGAG                         GAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATT
genomic: AGTACGAGGAGCTACTCAAAGAGGAACTGCGAATTGAGTTTCGTGGAGAGgtttctgtct ... ttggtttcagGAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATT
EST: gi|351026899|gb|FQ436552.1|FQ436552
EST:     AGTACGAGGAGCTACTCAAAGAGGAACTGCGAATTGAGTTTCGTGGAGAG                         GAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATT
genomic: AGTACGAGGAGCTACTCAAAGAGGAACTGCGAATTGAGTTTCGTGGAGAGgtttctgtct ... ttggtttcagGAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATT
EST: gi|351028525|gb|FQ444806.1|FQ444806
EST:     AGTACGAGGAGCTACTCAAAGAGGAACTGCGAATTGAGTTTCGTGGAGAG                         GAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATT
genomic: AGTACGAGGAGCTACTCAAAGAGGAACTGCGAATTGAGTTTCGTGGAGAGgtttctgtct ... ttggtttcagGAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATT
EST: gi|351021577|gb|FQ429681.1|FQ429681
EST:     AGTACGAGGAGCTACTCAAAGAGGAACTGCGAATTGAGTTTCGTGGAGAG                         GAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATT
genomic: AGTACGAGGAGCTACTCAAAGAGGAACTGCGAATTGAGTTTCGTGGAGAGgtttctgtct ... ttggtttcagGAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATT
EST: gi|37189179|gb|CF608528.1|CF608528
EST:     AGTATGAGGAGCTACTCAAAGAGGAACTGCGAATTGAGTTTCGTGGAGAG                         GAAGCCTTTGGA
genomic: AGTACGAGGAGCTACTCAAAGAGGAACTGCGAATTGAGTTTCGTGGAGAGgtttctgtct ... ttggtttcagGAAGCCTTTGGA
EST: gi|161715191|gb|FC066437.1|FC066437
EST:     AGTATGAGGAGCTACTCAAAGAGGAACTGCGAATTGAGTTTCGTGGAGAG                         GAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATT
genomic: AGTACGAGGAGCTACTCAAAGAGGAACTGCGAATTGAGTTTCGTGGAGAGgtttctgtct ... ttggtttcagGAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgactcgtgttctcacctttttcttaccattattaatcttgatttggtttcagGAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATTAATTCAAAATTTGGGGAGCACATTGAGTACTCTGCTTATGTTGAAGTCT
                              attattaatcttgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttctgtctctctctctcatatgtgtccttgcttgtgttgactcgtgttctcacctttttcttaccattattaatcttgatttggtttcagGAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATTAATTCAAAATTTGGGGAGCACATTGAGTACTCTGCTTATGTTGAAGTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG