1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgttgtacacctcatatttactagaaagtaatatcttgtgttttaatctgttacttaaagtttactatttatgtctgatacctttttgtgttccttgcagGAGAAGCACATTCACTGAAAGTTGAAAATATTTTATTCCAGGGAAAGTCTGAGTTTCAAGAGATACTGGTTTTTGAG
species | Vitis vinifera |
transcript | Vv16s0050g02670.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTG GAGAAGCACATTCACTGAAAGTTGAAAATATTTTATTCCAGGGAAAGTCTGEST: gi|71872710|gb|DT021765.1|DT021765
genomic: ATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTGgtatatatta ... ttccttgcagGAGAAGCACATTCACTGAAAGTTGAAAATATTTTATTCCAGGGAAAGTCTG
EST: ATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTG GAGAAGCACATTCACTGAAAGTTGAAAATATTTTATTCCAGGGAAAGTCTGEST: gi|161719336|gb|FC064840.1|FC064840
genomic: ATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTGgtatatatta ... ttccttgcagGAGAAGCACATTCACTGAAAGTTGAAAATATTTTATTCCAGGGAAAGTCTG
EST: ATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTG GAGAAGCACATTCACTGAAAGTTGAAAATATTTTATTCCAGGGAAAGTCTG
genomic: ATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTGgtatatatta ... ttccttgcagGAGAAGCACATTCACTGAAAGTTGAAAATATTTTATTCCAGGGAAAGTCTG
atctgttacttaaagtttactatttatgtctgatacctttttgtgttccttgcagGAGAAGCACATTCACTGAAAGTTGAAAATATTTTATTCCAGGGAAAGTCTGAGTTTCAAGAGATACTGGTTTTTGAG
cctttttgtgttcctt CT-rich tract
ttacttaaagtttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgtacacctcatatttactagaaagtaatatcttgtgttttaatctgttacttaaagtttactatttatgtctgatacctttttgtgttccttgcagGAGAAGCACATTCACTGAAAGTTGAAAATATTTTATTCCAGGGAAAGTCTGAGTTTCAAGAGATACTGGTTTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - -cacctca
- - - - - - - - - - - - aaagtaa
- - - - - - - - - - - - - - - - - - - - - - - -ctgttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctga