1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatcgaaatttatttcagattttcataccattttctctcctgagttctttaggcatgtattatgtgaaatgaatattaacagatcatgctgttgatgcagCACAATCTTCGACTGGTTTTGTTTGTAATCAACAAGTACTTTCAAGAGTTTGCCAATGGCCCAAAGTTTCAAGACCTGTGTCAAGCAGGAGTGAAGGGCC
species | Vitis vinifera |
transcript | Vv16s0050g02520.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAAGAAGATACTTGGAAGTTGGTCAAGCAGCAAGAAACAAGCTGATTAAG CACAATCTTCGACTGGTTTTGTTTGTAATCAACAAGTACTTTCAAGAGTTTEST: gi|110719640|gb|EE094946.1|EE094946
genomic: TAAGAAGACACATGGAAGTTGGTCAAGCAGCAAGAAACAAGCTGATTAAGgtaactattg ... gttgatgcagCACAATCTTCGACTGGTTTTGTTTGTAATCAACAAGTACTTTCAAGAGTTT
EST: TAAGAAGACACATGGAAGTTGGTCAAGCAGCAAGAAACAAGCTGATTAAG CACAATCTTCGACTGGTTTTGTTTGTAATCAACAAGTACTTTCAAGAGTTTEST: gi|28964869|gb|CB343902.1|CB343902
genomic: TAAGAAGACACATGGAAGTTGGTCAAGCAGCAAGAAACAAGCTGATTAAGgtaactattg ... gttgatgcagCACAATCTTCGACTGGTTTTGTTTGTAATCAACAAGTACTTTCAAGAGTTT
EST: TAAGAAGACACATGGAAGTTGGTCAAGCAGCAAGAAACAAGCTGATTAAG CACAATCTTCGACTGGTTTTGTTTGTAATCAACAAGTACTTTCAAGAGTTT
genomic: TAAGAAGACACATGGAAGTTGGTCAAGCAGCAAGAAACAAGCTGATTAAGgtaactattg ... gttgatgcagCACAATCTTCGACTGGTTTTGTTTGTAATCAACAAGTACTTTCAAGAGTTT
tctttaggcatgtattatgtgaaatgaatattaacagatcatgctgttgatgcagCACAATCTTCGACTGGTTTTGTTTGTAATCAACAAGTACTTTCAAGAGTTTGCCAATGGCCCAAAGTTTCAAGACCTGTGTCAAGCAGGAGTGAAGGGCC
tattatgtgaaatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcgaaatttatttcagattttcataccattttctctcctgagttctttaggcatgtattatgtgaaatgaatattaacagatcatgctgttgatgcagCACAATCTTCGACTGGTTTTGTTTGTAATCAACAAGTACTTTCAAGAGTTTGCCAATGGCCCAAAGTTTCAAGACCTGTGTCAAGCAGGAGTGAAGGGCC
aatcgaaa
- - - - - - - - - - - -catacca
- - - - - - - - - - - - - - - - - ctctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgct