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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatcttttgtaatgaaatggtcattgttttttactttgttcttgcttctctcggttttacattattgtgctgatacatagtctgcatgtaaatgtgttgtgtatcagTTCTGATGCAGTCTATTTGTGAGGACATTGAAAAAGAACATCATGCAATTCAGAACAGCGATGTGGTTGTTTTCTTTCAGGTTTCTCAGTTCGTTACATC

Basic information

species Vitis vinifera
transcript Vv16s0050g02160.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g02160.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G37220.1 (Glycine max), 3'ss of exon 7
gtatatcttttgtaatgaaatggtcattgttttttactttgttcttgcttctctcggttttacattattgtgctgatacatagtctgcatgtaaatgtgttgtgtatcagTTCTGATGCAGTCTATTTGTGAGGACATTGAAAAAGAACATCATGCAATTCAGAACAGCGATGTGGTTGTTTTCTTTCAGGTTTCTCAGTTCGTTACATC
                                      |  || |    | | |   |||   |||||       |||  || |||   |  || |      |||||||||| ||||||| || ||| |||| || ||||||||||||||||   ||||||| || || ||||| | |||||||||||| ||  || | || || || ||
-----------------------------------gtatcattttcaaatatttttttttccaattataaaagctataagtaatcttactacaatttgaacctgtatcagTTTTGATGCAATCCATTCGTGAAGATATTGAAAAAGAACATCCCTCAATTCAAAAAAGTGATGTTGCTGTTTTCTTTCAAGTGGCTGAATTTGTCACTTC

upper sequence: Vv16s0050g02160.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G30420.1 (Glycine max), 3'ss of exon 6
gtatatcttttgtaatgaaatggtcattgttttttactttgttcttgcttctctcggttttacattattgtgctgatacatagtctgcatgtaaatgtgttgtgtatcagTTCTGATGCAGTCTATTTGTGAGGACATTGAAAAAGAACATCATGCAATTCAGAACAGCGATGTGGTTGTTTTCTTTCAGGTTTCTCAGTTCGTTACATC
||||    ||| |  |   |   | | | | | | | |||    |   || | | |||||   |||         | |  || |||   || || |      |||||||||| ||||||  || ||| |||| || |||||||| |||||||   ||||||| || || ||||| |||||||||||||| ||  || | || || || ||
gtatgatgttttttttttcagaataaat-tgtatcattttcaaatatattgttttggtttccaattgcaaaagctaaaagtaatctcactgcaatttgaacctgtatcagTTTTGATGCGATCCATTCGTGAAGATATTGAAAAGGAACATCCCTCAATTCAAAAAAGTGATGTTGTTGTTTTCTTTCAAGTGGCTGAATTTGTCACTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttttacattattgtgctgatacatagtctgcatgtaaatgtgttgtgtatcagTTCTGATGCAGTCTATTTGTGAGGACATTGAAAAAGAACATCATGCAATTCAGAACAGCGATGTGGTTGTTTTCTTTCAGGTTTCTCAGTTCGTTACATC
               tgctgat  putative branch site (score: 3)
     tacattatt  TA-rich tract