Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaattgttcattttaagcattcctatacacaattctcatgtgaagatatcttatatatgtcatatctggcagCTCCAGTACTCTCACAAGGGACAGGGTCTTTCCATTCTTCAGCTGCTCTACGTGAAACCGGATATGTTCTTAGGCCTGATTCATCATCAATTCTTAGGAA

Basic information

species Vitis vinifera
transcript Vv16s0050g01180.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01180.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G29740.1 (Glycine max), 3'ss of exon 3
gtgagaattgttcattttaagcattcctatacacaattctcatgtgaagatatcttat-----atatgtcatatctggcagCTCCAGTACTCTCACAAGGGACAGGGTCTTTCCATTCTTCAGCTGCTCTACGTGAAACCGGATATGTTCTTAGGCCTGATTCATCATCAATTCTTAGGAA
|| | |||  ||||   |    |||  | || |||| |    ||     |||||| ||     |||  | | |||||||||||||||||||||||||||   | ||   ||| || |||||| ||||| | | |||| | |||||| |  | | |  |||| |  || |||| ||||  | 
gtcataatctttcaccatt--tattttt-tagacaacttaagtgcatttatatctaattatttataattgacatctggcagCTCCAGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGCTTGAACCTGGATATATCTTGAAGAATGATGCCCCACCAATGCTTAAAAC

upper sequence: Vv16s0050g01180.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G24400.1 (Glycine max), 3'ss of exon 3
gtgagaattgttcattttaagcattcctatacacaattctcatgtgaagatatcttatatatg-----tcatatctggcagCTCCAGTACTCTCACAAGGGACAGGGTCTTTCCATTCTTCAGCTGCTCTACGTGAAACCGGATATGTTCTTAGGCCTGATTCATCATCAATTCTTAGGAA
|| | |||  ||||   |      |  | ||  |||||    ||     |||||| |||| |      | ||||||||||||||| |||||||||||||   | ||   ||| || |||||| ||||| | | |||| | |||||  |    | |  |||| |  || |||| ||||  | 
gtcataatctttcaccat---ttcttttttagtcaatttaagtgcatttatatctgatattttataattgatatctggcagCTCCTGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGCTTGAACCTGGATACATCTCAAAGAATGATGCCCCACCAATGCTTAAAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351034613|gb|FQ457970.1|FQ457970
EST:     GCCAAAAAGAAAAGCAGCACATCCATATCCTCACAAAGCCTCCAAAAATG                         CTCCAGTACTCTCACAAGGGACAGGGTCTTTCCATTCTTCAGCTGCTCTAC
genomic: GCCAAAAAGAAAAGCAGCACATCCATATCCTCACAAAGCCTCCAAAAATGgtgagaattg ... tatctggcagCTCCAGTACTCTCACAAGGGACAGGGTCTTTCCATTCTTCAGCTGCTCTAC
EST: gi|351022507|gb|FQ447029.1|FQ447029
EST:     GCCAAAAAGAAAAGCAGCACATCCATATCCTCACAAAGCCTCCAAAAATG                         CTCCAGTACTCTCACAAGGGACAGGGTCTTTCCATTCTTCAGCTGCTCTAC
genomic: GCCAAAAAGAAAAGCAGCACATCCATATCCTCACAAAGCCTCCAAAAATGgtgagaattg ... tatctggcagCTCCAGTACTCTCACAAGGGACAGGGTCTTTCCATTCTTCAGCTGCTCTAC
EST: gi|349832942|gb|FQ423064.1|FQ423064
EST:     GCCAAAAAGAAAAGCAGCACATCCATATCCTCACAAAGCCTCCAAAAATG                         CTCCAGTACTCTCACAAGGGACAGGGTCTTTCCATTCTTCAGCTGCTCTAC
genomic: GCCAAAAAGAAAAGCAGCACATCCATATCCTCACAAAGCCTCCAAAAATGgtgagaattg ... tatctggcagCTCCAGTACTCTCACAAGGGACAGGGTCTTTCCATTCTTCAGCTGCTCTAC
EST: gi|351013330|gb|FQ425035.1|FQ425035
EST:     GCCAAAAAGAAAAGCAGCACATCCATATCCTCACAAAGCCTCCAAAAATG                         CTCCAGTACTCTCACAAGGGACAGGGTCTTTCCATTCTTCAGCTGCTCTAC
genomic: GCCAAAAAGAAAAGCAGCACATCCATATCCTCACAAAGCCTCCAAAAATGgtgagaattg ... tatctggcagCTCCAGTACTCTCACAAGGGACAGGGTCTTTCCATTCTTCAGCTGCTCTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattcctatacacaattctcatgtgaagatatcttatatatgtcatatctggcagCTCCAGTACTCTCACAAGGGACAGGGTCTTTCCATTCTTCAGCTGCTCTACGTGAAACCGGATATGTTCTTAGGCCTGATTCATCATCAATTCTTAGGAA
                         aagatatcttatatat  TA-rich tract